Information for 17-CCATAAAAAG (Motif 20)

A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.388e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 28.9bp
Average Position of motif in Background31.4 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CCATAAAAAG
AAGCCATAAAA--
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAAAG
CCAATAAAAA-
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAAAG
CCAATAAAAC-
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAAAG
CCAATAAAAA-
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAAAG
GCAATAAAA--
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CCATAAAAAG
CCATATATGG
 A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAAAG
GTCATAAAAN-
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CCATAAAAAG
NCYAATAAAA--
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAAAG--
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCATAAAAAG
CCYMATAAAA--
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C T G
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T