Information for 3-YWGATDDHHATCT (Motif 3)

A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
Reverse Opposite:
C G T A A T C G C G T A A C G T C A G T C T G A G C T A G T C A C G T A A C G T A G T C C G T A T C A G
p-value:1e-25
log p-value:-5.944e+01
Information Content per bp:1.676
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.33%
Number of Background Sequences with motif295.6
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets56.1 +/- 24.1bp
Average Position of motif in Background51.4 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:YWGATDDHHATCT--
NAGATWNBNATCTNN
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

GATA2/MA0036.2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:YWGATDDHHATCT--
-AGATTCTTATCTGT
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T A C G T A C G T
A C G T C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:YWGATDDHHATCT
CTCATTTGCATW-
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YWGATDDHHATCT--
NCGTATTATAATCNTA
 A C G T A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

GATA5/MA0766.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YWGATDDHHATCT
-AGATAAGA----
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:YWGATDDHHATCT
BTVATTWGCATA-
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YWGATDDHHATCT--
TATAATTATAATATTC
 A C G T A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:YWGATDDHHATCT
-TTATGCAAATTA
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:YWGATDDHHATCT
-----YSTTATCT
 A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
A C G T A C G T A C G T A C G T A C G T A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--YWGATDDHHATCT
CNGTGATTTN-----
 A C G T A C G T A G T C C G A T A C T G C G T A A C G T C A G T C G A T G A C T G C T A C G T A A C G T A T G C C G A T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T