Information for 11-CTCCTAGTAA (Motif 18)

A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A
Reverse Opposite:
A C G T A G C T T G C A A G T C G C A T C T G A C T A G A C T G C G T A A T C G
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.842
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif54.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets57.2 +/- 24.5bp
Average Position of motif in Background56.8 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTCCTAGTAA--
--ACTAGTTAAC
 A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTCCTAGTAA---
-SCCTAGCAACAG
 A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CTCCTAGTAA
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

STAT3/MA0144.2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCCTAGTAA-
CTTCTGGGAAA
 A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCCTAGTAA--
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAGTAA----
CCGCATAGCAACGGA
 A C G T A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAGTAA---
TTTCCTAGAAAGCA
 A C G T A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

HOXC13/MA0907.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCCTAGTAA---
--GCTCGTAAAAA
 A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PB0006.1_Bcl6b_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTCCTAGTAA--
NNNATTCCTCGAAAGN
 A C G T A C G T A C G T A C G T A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T A C G T
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A

STAT1/MA0137.3/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCCTAGTAA-
TTTCCAGGAAA
 A T G C A C G T T G A C A G T C A G C T C G T A A C T G A C G T C T G A C G T A A C G T
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A