Information for 4-CCACAAAAGGCAGTGG (Motif 13)

A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
Reverse Opposite:
A T G C T G A C G C T A A T G C A C G T A C T G A G T C A G T C G A C T A G C T A C G T A C G T A C T G A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.802
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 26.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

KLF13/MA0657.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCACAAAAGGCAGTGG---
-CAAAAAGGGGCGTGGCAT
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G A C G T A C G T A C G T
A C G T G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCACAAAAGGCAGTGG
CCATATATGGNA----
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCACAAAAGGCAGTGG
NWAACCACADNN--------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCACAAAAGGCAGTGG
---CAAAGGTCAG---
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCACAAAAGGCAGTGG
CCATATATGG------
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAAAGGCAGTGG
AAACCACAGAN--------
 A C G T A C G T A C G T A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCACAAAAGGCAGTGG
-RACAAWGG-------
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCACAAAAGGCAGTGG
TTCCATATATGGAA----
 A C G T A C G T A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCACAAAAGGCAGTGG
-AACAAAGG-------
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCACAAAAGGCAGTGG
--ACAAAGGNBCCT--
 A G T C A G T C C G T A G T A C G T C A C G T A C T G A C T G A A C T G C T A G A G T C G T C A A T C G C G A T A C T G A T C G
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T