Information for 13-AGGAAGGYCCHKG (Motif 20)

C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
Reverse Opposite:
A T G C T G C A C A G T A C T G A C T G T C G A A T G C A T G C G A C T A G C T A G T C A G T C G A C T
p-value:1e-5
log p-value:-1.301e+01
Information Content per bp:1.701
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif109.1
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets54.5 +/- 26.8bp
Average Position of motif in Background48.8 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGGAAGGYCCHKG
-GGAAANCCCC--
 C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGGAAGGYCCHKG
-GGAAATTCCC--
 C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGGAAGGYCCHKG
-GGAAATCCCC--
 C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGAAGGYCCHKG
GGGAAATCCCCN-
 C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGAAGGYCCHKG
TGGGGAAGGGCM---
 A C G T A C G T C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGGAAGGYCCHKG
NDCAGGAARTNN----
 A C G T A C G T A C G T C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGAAGGYCCHKG
-GGAAATTCCC--
 C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGAAGGYCCHKG
ANCAGGAAGT------
 A C G T A C G T A C G T C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGAAGGYCCHKG--
AAGGKGRCGCAGGCA
 C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G A C G T A C G T
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGAAGGYCCHKG
AVCAGGAAGT------
 A C G T A C G T A C G T C T G A C T A G A C T G C T G A C T G A A T C G A T C G A G C T A G T C A G T C G T C A A C G T A T C G
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T