Information for 11-GAGAGAGAAAGAA (Motif 19)

T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
Reverse Opposite:
A G C T G A C T A G T C A G C T A G C T A C G T A G T C A C G T A T G C A G C T A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.726
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif91.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets51.0 +/- 28.9bp
Average Position of motif in Background49.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAAAGAA--
AAACAGACAAAGGAAT
 A C G T T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAAAGAA
AGGTGNCAGACAG--
 A C G T A C G T T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAAAGAA
GAAAGTGAAAGT-
 T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAAAGAA
GGGCGGGAAGG--
 T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGAGAGAAAGAA
-GGCGGGAARN--
 T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAAAGAA-
AGAAAGTGAAAGTGA
 A C G T T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A A C G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGAAAGAA
AGGTGHCAGACA---
 A C G T A C G T T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAAAGAA
GGGCGGGAAGG--
 T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAAAGAA
NNNACCGAGAGTNNN
 A C G T A C G T T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGAGAGAAAGAA----
---GGAGAAAGGTGCGA
 T C A G G T C A A C T G T C G A A T C G C G T A C T A G C G T A T C G A C T G A C T A G C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A