Information for 9-GACAGACAAA (Motif 32)

A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C
p-value:1e-6
log p-value:-1.543e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.6 +/- 31.7bp
Average Position of motif in Background37.2 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GACAGACAAA-----
AAACAGACAAAGGAAT
 A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GACAGACAAA
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GACAGACAAA
-BCAGACWA-
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GACAGACAAA
AGGTGNCAGACAG-
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GACAGACAAA--
--AAAACAAAGG
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GACAGACAAA-
-CCAGACRSVB
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GACAGACAAA
-CCAGACAG-
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GACAGACAAA---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GACAGACAAA--
--VRRACAAWGG
 A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GACAGACAAA
TTGACAG-----
 A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T