Information for 2-GRGASAGAGMAGKGKK (Motif 3)

T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G
Reverse Opposite:
G T A C G T A C G T A C G T C A T G A C A G C T A C G T A G T C C A G T A T G C G C A T A T G C C G A T A T G C G A T C A G T C
p-value:1e-14
log p-value:-3.313e+01
Information Content per bp:1.649
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif166.1
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets46.7 +/- 24.6bp
Average Position of motif in Background54.9 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GRGASAGAGMAGKGKK
----CACAGCAGGGGG
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Gata1/MA0035.3/Jaspar

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GRGASAGAGMAGKGKK
---ANAGATAAGAA--
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G
A C G T A C G T A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GRGASAGAGMAGKGKK--
----CACAGCGGGGGGTC
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Gata4/MA0482.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GRGASAGAGMAGKGKK
--NNGAGATAAGA---
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G
A C G T A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GRGASAGAGMAGKGKK--
---DCHCAGCAGGRGGCC
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GRGASAGAGMAGKGKK
AAACAGACAAAGGAAT---
 A C G T A C G T A C G T T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GRGASAGAGMAGKGKK---
-----GGAGAAAGGTGCGA
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GRGASAGAGMAGKGKK--
-NNNNTGAGCACTGTNNG
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G A C G T A C G T
A C G T G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GRGASAGAGMAGKGKK---
--NNNANTGCAGTGCNNTT
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GRGASAGAGMAGKGKK
----CAGATAAGGN--
 T C A G C T A G T A C G C G T A A T C G C G T A A T C G G C T A C T A G G T C A C T G A A C T G C A G T A C T G A C T G A C T G
A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A A C G T A C G T