Information for 11-GAATCCCTAGCAG (Motif 27)

A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G
Reverse Opposite:
A G T C C G A T A C T G A G T C G C A T C T G A C T A G C T A G T C A G T C G A C G A T C A G T A G T C
p-value:1e-8
log p-value:-1.856e+01
Information Content per bp:1.689
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif238.5
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets46.9 +/- 22.7bp
Average Position of motif in Background50.6 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT3/MA0144.2/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAATCCCTAGCAG
--TTTCCCAGAAN
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G
A C G T A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G

BCL6B/MA0731.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAATCCCTAGCAG---
TGAATTCCTAGAAAGCA
 A C G T A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAATCCCTAGCAG---
----SCCTAGCAACAG
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GAATCCCTAGCAG----
-----CACAGCAGGGGG
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAATCCCTAGCAG
-ATTTCCAAGAA-
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G
A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAATCCCTAGCAG----
--TACCATAGCAACGGT
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAATCCCTAGCAG--------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAATCCCTAGCAG---
-ATTTCCCAGVAKSCY
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G A C G T A C G T A C G T
A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Stat4/MA0518.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAATCCCTAGCAG
NNNTTTCCTGGAAA
 A C G T A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G
A G T C A T G C T C G A A G C T A C G T A C G T A G T C G A T C G A C T C T A G A C T G G T C A C G T A T C G A

STAT1/MA0137.3/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAATCCCTAGCAG
--TTTCCTGGAAA
 A C T G G T C A G C T A A G C T A G T C A G T C A G T C G A C T C G T A A C T G A G T C C G T A C T A G
A C G T A C G T G A C T A C G T A G C T G T A C A G T C G A C T C T A G A C T G T G C A C T G A T G C A