Information for 7-AAGGGCAACCAAG (Motif 20)

C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
Reverse Opposite:
A G T C C G A T A C G T A C T G T A C G A G C T A C G T A C T G G T A C G T A C G T A C C G A T C G A T
p-value:1e-9
log p-value:-2.217e+01
Information Content per bp:1.785
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.2 +/- 22.3bp
Average Position of motif in Background60.8 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGGGCAACCAAG----
AAGGTCACGAAAGGTCA
 C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G A C G T A C G T A C G T A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAACCAAG
CAAGGHCANV----
 A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGGGCAACCAAG
TCAAGGTCAN-----
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGGGCAACCAAG
CAAAGGTCAG-----
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGGGCAACCAAG
TCAAGGTCAT-----
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGGGCAACCAAG------
GAGGGCAGCCAAGCGTGAC
 C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGGCAACCAAG
AAGGTCAC-----
 C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AAGGGCAACCAAG
----CCAATCAA-
 C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAGGGCAACCAAG
BTCAAGGTCA------
 A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAACCAAG
TRAGGTCA------
 A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C T G A A T G C G T A C G T C A C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T