Information for 7-ATGAAAATAA (Motif 9)

C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T G C A T C G T A G C A T A C G T A C G T C G A T A G T C G T C A G C A T
p-value:1e-7
log p-value:-1.740e+01
Information Content per bp:1.818
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif152.5
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets53.5 +/- 28.9bp
Average Position of motif in Background49.2 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATGAAAATAA-
WATGCAAATGAG
 A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ATGAAAATAA-
ATATGCAAATNNN
 A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ATGAAAATAA
TATGTAAATAT
 A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATGAAAATAA-
AATATGCAAATTAG
 A C G T A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ATGAAAATAA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ATGAAAATAA-
TATGCWAATBAV
 A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGAAAATAA
TTATGCAAATTA
 A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGAAAATAA
TTATGCAAATTA
 A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATGAAAATAA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATGAAAATAA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G G C T A G T C A G T C A C G T A A C G T C G T A C G T A A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A