Information for 5-GAGKGACAGGCARRTG (Motif 3)

A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G
Reverse Opposite:
A T G C C G T A A G T C A G T C A C G T C T A G A T G C G A T C C G A T A C T G A C G T G A T C G T A C A G T C A C G T A T G C
p-value:1e-15
log p-value:-3.617e+01
Information Content per bp:1.709
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.8 +/- 26.9bp
Average Position of motif in Background46.7 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GAGKGACAGGCARRTG-
------AAGGCAAGTGT
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGKGACAGGCARRTG
TGAGTGACAGSC-----
 A C G T A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:GAGKGACAGGCARRTG--
--------NNCAGGTGNN
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

TCF4/MA0830.1/Jaspar

Match Rank:4
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:GAGKGACAGGCARRTG--
--------NNCAGGTGCG
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

ID4/MA0824.1/Jaspar

Match Rank:5
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:GAGKGACAGGCARRTG--
--------GACAGGTGTN
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

TCF3/MA0522.2/Jaspar

Match Rank:6
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:GAGKGACAGGCARRTG--
--------NNCAGGTGTN
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GAGKGACAGGCARRTG-
--------AACAGGTGT
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GAGKGACAGGCARRTG---
-------SDGCAGGTGCNS
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGKGACAGGCARRTG------
-----AAGGCCAGATGGTCCGG
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GAGKGACAGGCARRTG--
------NNVVCAGCTGBN
 A T C G C G T A T A C G A C T G C T A G C G T A G T A C G C T A C T A G A T C G A G T C C G T A C T A G C T A G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T