Information for 11-AGGCTGGCAGGAC (Motif 11)

C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
Reverse Opposite:
A C T G A C G T A T G C A G T C A C G T C T A G A G T C T A G C C G T A A C T G G T A C A G T C A G C T
p-value:1e-13
log p-value:-3.053e+01
Information Content per bp:1.799
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets27.8 +/- 14.9bp
Average Position of motif in Background52.0 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTGGCAGGAC
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTGGCAGGAC
SCAGYCADGCATGAC
 A C G T A C G T C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGCTGGCAGGAC
-VGCTGWCAVB--
 C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGCTGGCAGGAC
-GGTTGGCAT---
 C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGCTGGCAGGAC
--CTTGGCAA---
 C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGGCTGGCAGGAC--
-----GGGAGGACNG
 C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGGCTGGCAGGAC
TWGTCTGV------
 A C G T C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGCTGGCAGGAC
-NGCTN-------
 C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGGCTGGCAGGAC-
--SCTGTCARCACC
 C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTGGCAGGAC---
NAGANTGGCGGGGNGNA
 A C G T C T G A C T A G A C T G A G T C C G A T A C T G T C A G A G T C G T C A C T A G A T C G G T C A A G T C A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A