Information for 4-GTCCCATGCT (Motif 5)

T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T
Reverse Opposite:
G T C A A C T G G T A C C G T A G C A T C T A G A C T G A T C G C G T A A G T C
p-value:1e-11
log p-value:-2.586e+01
Information Content per bp:1.794
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif246.8
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets50.4 +/- 25.2bp
Average Position of motif in Background48.2 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTCCCATGCT------
-TCNCCTGCTGNGNNN
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTCCCATGCT
GTCACATGAY
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

USF2/MA0526.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCCCATGCT
GGTCACATGAC
 A C G T T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

USF1/MA0093.2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCCCATGCT
GGTCACGTGGC
 A C G T T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T
C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCCCATGCT---
-CCCCCTGCTGTG
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T A C G T A C G T A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCCCATGCT------
-TNTCCTGCTGTGNNG
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCCCATGCT
GTCACGTGGT
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T
T C A G A C G T A G T C T C G A A G T C T C A G G C A T C T A G C T A G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCCCATGCT----
GGCCYCCTGCTGDGH
 A C G T T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T A C G T A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTCCCATGCT----
----CCTGCTGAGH
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTCCCATGCT------
-NNTCCTGCTGTGNNN
 T C A G A C G T A T G C G T A C A G T C C G T A C G A T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C