Information for 6-CGGCAGGGAC (Motif 10)

T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
Reverse Opposite:
T A C G A C G T A G T C T G A C A G T C A G C T A T C G A G T C T A G C A C T G
p-value:1e-10
log p-value:-2.360e+01
Information Content per bp:1.855
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif169.6
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets51.7 +/- 26.1bp
Average Position of motif in Background51.6 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGCAGGGAC
CACAGCAGGGGG
 A C G T A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CGGCAGGGAC--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CGGCAGGGAC
GGGGCTYGKCTGGGA-
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

POL011.1_XCPE1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGGCAGGGAC-
-GGGCGGGACC
 T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C A C G T
A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

Gabpa/MA0062.2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGGCAGGGAC
CCGGAAGTGGC
 A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGGCAGGGAC
DCTCAGCAGG---
 A C G T A C G T A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGCAGGGAC
CWGGCGGGAA-
 A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CGGCAGGGAC--
NAGANTGGCGGGGNGNA
 A C G T A C G T A C G T A C G T A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGGCAGGGAC
GGGGGCGGGGCC
 A C G T A C G T T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CGGCAGGGAC--
--GCAGTGATTT
 T G A C A T C G A C T G A T G C C T G A A C T G A C T G A C T G G T C A A T G C A C G T A C G T
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T