Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-43 | -9.993e+01 | 0.0000 | 58.0 | 7.32% | 270.5 | 0.56% | motif file (matrix) |
svg |
2 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-42 | -9.833e+01 | 0.0000 | 218.0 | 27.53% | 4830.9 | 10.08% | motif file (matrix) |
svg |
3 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-35 | -8.191e+01 | 0.0000 | 74.0 | 9.34% | 683.2 | 1.43% | motif file (matrix) |
svg |
4 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-35 | -8.123e+01 | 0.0000 | 63.0 | 7.95% | 472.6 | 0.99% | motif file (matrix) |
svg |
5 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-35 | -8.111e+01 | 0.0000 | 92.0 | 11.62% | 1112.5 | 2.32% | motif file (matrix) |
svg |
6 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-34 | -8.018e+01 | 0.0000 | 87.0 | 10.98% | 1001.8 | 2.09% | motif file (matrix) |
svg |
7 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-33 | -7.825e+01 | 0.0000 | 99.0 | 12.50% | 1341.6 | 2.80% | motif file (matrix) |
svg |
8 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-33 | -7.769e+01 | 0.0000 | 62.0 | 7.83% | 484.9 | 1.01% | motif file (matrix) |
svg |
9 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-33 | -7.704e+01 | 0.0000 | 348.0 | 43.94% | 11578.9 | 24.16% | motif file (matrix) |
svg |
10 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-33 | -7.616e+01 | 0.0000 | 97.0 | 12.25% | 1322.0 | 2.76% | motif file (matrix) |
svg |
11 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-32 | -7.371e+01 | 0.0000 | 89.0 | 11.24% | 1148.0 | 2.40% | motif file (matrix) |
svg |
12 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-30 | -7.137e+01 | 0.0000 | 224.0 | 28.28% | 6057.5 | 12.64% | motif file (matrix) |
svg |
13 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-30 | -7.101e+01 | 0.0000 | 102.0 | 12.88% | 1558.8 | 3.25% | motif file (matrix) |
svg |
14 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-30 | -6.973e+01 | 0.0000 | 116.0 | 14.65% | 2014.9 | 4.20% | motif file (matrix) |
svg |
15 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-28 | -6.615e+01 | 0.0000 | 99.0 | 12.50% | 1567.9 | 3.27% | motif file (matrix) |
svg |
16 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-27 | -6.352e+01 | 0.0000 | 102.0 | 12.88% | 1715.1 | 3.58% | motif file (matrix) |
svg |
17 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-22 | -5.250e+01 | 0.0000 | 87.0 | 10.98% | 1498.0 | 3.13% | motif file (matrix) |
svg |
18 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-22 | -5.237e+01 | 0.0000 | 90.0 | 11.36% | 1596.1 | 3.33% | motif file (matrix) |
svg |
19 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-19 | -4.581e+01 | 0.0000 | 38.0 | 4.80% | 318.0 | 0.66% | motif file (matrix) |
svg |
20 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-18 | -4.354e+01 | 0.0000 | 92.0 | 11.62% | 1900.6 | 3.97% | motif file (matrix) |
svg |
21 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-18 | -4.265e+01 | 0.0000 | 33.0 | 4.17% | 251.5 | 0.52% | motif file (matrix) |
svg |
22 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-16 | -3.855e+01 | 0.0000 | 39.0 | 4.92% | 419.5 | 0.88% | motif file (matrix) |
svg |
23 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-16 | -3.815e+01 | 0.0000 | 100.0 | 12.63% | 2370.3 | 4.95% | motif file (matrix) |
svg |
24 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-14 | -3.347e+01 | 0.0000 | 39.0 | 4.92% | 491.1 | 1.02% | motif file (matrix) |
svg |
25 |
| RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-14 | -3.271e+01 | 0.0000 | 112.0 | 14.14% | 3070.6 | 6.41% | motif file (matrix) |
svg |
26 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-14 | -3.250e+01 | 0.0000 | 27.0 | 3.41% | 230.0 | 0.48% | motif file (matrix) |
svg |
27 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-13 | -3.028e+01 | 0.0000 | 101.0 | 12.75% | 2731.8 | 5.70% | motif file (matrix) |
svg |
28 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-10 | -2.438e+01 | 0.0000 | 49.0 | 6.19% | 987.3 | 2.06% | motif file (matrix) |
svg |
29 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-10 | -2.418e+01 | 0.0000 | 53.0 | 6.69% | 1131.7 | 2.36% | motif file (matrix) |
svg |
30 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-10 | -2.372e+01 | 0.0000 | 72.0 | 9.09% | 1858.8 | 3.88% | motif file (matrix) |
svg |
31 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-10 | -2.338e+01 | 0.0000 | 71.0 | 8.96% | 1833.5 | 3.83% | motif file (matrix) |
svg |
32 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-9 | -2.301e+01 | 0.0000 | 49.0 | 6.19% | 1028.2 | 2.15% | motif file (matrix) |
svg |
33 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-9 | -2.299e+01 | 0.0000 | 65.0 | 8.21% | 1616.0 | 3.37% | motif file (matrix) |
svg |
34 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-9 | -2.150e+01 | 0.0000 | 55.0 | 6.94% | 1296.0 | 2.70% | motif file (matrix) |
svg |
35 |
| ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-9 | -2.104e+01 | 0.0000 | 35.0 | 4.42% | 619.6 | 1.29% | motif file (matrix) |
svg |
36 |
| GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-8 | -2.035e+01 | 0.0000 | 35.0 | 4.42% | 637.0 | 1.33% | motif file (matrix) |
svg |
37 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-8 | -2.017e+01 | 0.0000 | 14.0 | 1.77% | 97.3 | 0.20% | motif file (matrix) |
svg |
38 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-8 | -1.956e+01 | 0.0000 | 29.0 | 3.66% | 470.1 | 0.98% | motif file (matrix) |
svg |
39 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-8 | -1.934e+01 | 0.0000 | 16.0 | 2.02% | 142.1 | 0.30% | motif file (matrix) |
svg |
40 |
| Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.822e+01 | 0.0000 | 13.0 | 1.64% | 95.2 | 0.20% | motif file (matrix) |
svg |
41 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.684e+01 | 0.0000 | 83.0 | 10.48% | 2680.8 | 5.59% | motif file (matrix) |
svg |
42 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-7 | -1.669e+01 | 0.0000 | 51.0 | 6.44% | 1335.3 | 2.79% | motif file (matrix) |
svg |
43 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-7 | -1.648e+01 | 0.0000 | 52.0 | 6.57% | 1384.8 | 2.89% | motif file (matrix) |
svg |
44 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-6 | -1.607e+01 | 0.0000 | 33.0 | 4.17% | 690.0 | 1.44% | motif file (matrix) |
svg |
45 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-6 | -1.597e+01 | 0.0000 | 100.0 | 12.63% | 3520.0 | 7.34% | motif file (matrix) |
svg |
46 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-6 | -1.591e+01 | 0.0000 | 112.0 | 14.14% | 4093.6 | 8.54% | motif file (matrix) |
svg |
47 |
| Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-6 | -1.509e+01 | 0.0000 | 59.0 | 7.45% | 1740.0 | 3.63% | motif file (matrix) |
svg |
48 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-5 | -1.349e+01 | 0.0000 | 32.0 | 4.04% | 739.1 | 1.54% | motif file (matrix) |
svg |
49 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.255e+01 | 0.0000 | 38.0 | 4.80% | 1005.1 | 2.10% | motif file (matrix) |
svg |
50 |
| VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-5 | -1.221e+01 | 0.0000 | 22.0 | 2.78% | 430.3 | 0.90% | motif file (matrix) |
svg |
51 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-4 | -1.135e+01 | 0.0001 | 40.0 | 5.05% | 1143.3 | 2.39% | motif file (matrix) |
svg |
52 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-4 | -9.311e+00 | 0.0006 | 8.0 | 1.01% | 83.4 | 0.17% | motif file (matrix) |
svg |
53 |
| LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.838e+00 | 0.0010 | 8.0 | 1.01% | 89.7 | 0.19% | motif file (matrix) |
svg |
54 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.608e+00 | 0.0012 | 120.0 | 15.15% | 5249.1 | 10.95% | motif file (matrix) |
svg |
55 |
| Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer | 1e-3 | -7.924e+00 | 0.0024 | 38.0 | 4.80% | 1257.0 | 2.62% | motif file (matrix) |
svg |
56 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-3 | -7.641e+00 | 0.0031 | 34.0 | 4.29% | 1099.0 | 2.29% | motif file (matrix) |
svg |
57 |
| RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-3 | -7.587e+00 | 0.0032 | 13.0 | 1.64% | 260.5 | 0.54% | motif file (matrix) |
svg |
58 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-3 | -7.521e+00 | 0.0034 | 4.0 | 0.51% | 22.6 | 0.05% | motif file (matrix) |
svg |
59 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-3 | -7.336e+00 | 0.0040 | 9.0 | 1.14% | 140.0 | 0.29% | motif file (matrix) |
svg |
60 |
| YY1(Zf)/Promoter/Homer | 1e-3 | -7.111e+00 | 0.0050 | 10.0 | 1.26% | 175.6 | 0.37% | motif file (matrix) |
svg |
61 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -6.634e+00 | 0.0078 | 4.0 | 0.51% | 28.9 | 0.06% | motif file (matrix) |
svg |
62 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -6.294e+00 | 0.0108 | 36.0 | 4.55% | 1284.7 | 2.68% | motif file (matrix) |
svg |
63 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.170e+00 | 0.0121 | 109.0 | 13.76% | 5018.6 | 10.47% | motif file (matrix) |
svg |
64 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.033e+00 | 0.0136 | 31.0 | 3.91% | 1073.8 | 2.24% | motif file (matrix) |
svg |
65 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.732e+00 | 0.0182 | 32.0 | 4.04% | 1142.1 | 2.38% | motif file (matrix) |
svg |
66 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.700e+00 | 0.0184 | 70.0 | 8.84% | 3029.3 | 6.32% | motif file (matrix) |
svg |
67 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -5.692e+00 | 0.0184 | 43.0 | 5.43% | 1670.9 | 3.49% | motif file (matrix) |
svg |
68 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.516e+00 | 0.0215 | 173.0 | 21.84% | 8665.3 | 18.08% | motif file (matrix) |
svg |
69 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-2 | -5.426e+00 | 0.0232 | 46.0 | 5.81% | 1844.2 | 3.85% | motif file (matrix) |
svg |
70 |
| SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer | 1e-2 | -5.310e+00 | 0.0257 | 30.0 | 3.79% | 1082.4 | 2.26% | motif file (matrix) |
svg |
71 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.283e+00 | 0.0260 | 80.0 | 10.10% | 3610.5 | 7.53% | motif file (matrix) |
svg |
72 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -5.260e+00 | 0.0263 | 16.0 | 2.02% | 462.2 | 0.96% | motif file (matrix) |
svg |
73 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.215e+00 | 0.0271 | 26.0 | 3.28% | 904.4 | 1.89% | motif file (matrix) |
svg |
74 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.214e+00 | 0.0271 | 72.0 | 9.09% | 3199.0 | 6.67% | motif file (matrix) |
svg |
75 |
| GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.197e+00 | 0.0271 | 7.0 | 0.88% | 126.5 | 0.26% | motif file (matrix) |
svg |
76 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.194e+00 | 0.0271 | 185.0 | 23.36% | 9415.7 | 19.64% | motif file (matrix) |
svg |
77 |
| RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -5.175e+00 | 0.0271 | 11.0 | 1.39% | 267.2 | 0.56% | motif file (matrix) |
svg |
78 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.157e+00 | 0.0271 | 49.0 | 6.19% | 2023.6 | 4.22% | motif file (matrix) |
svg |
79 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.102e+00 | 0.0280 | 18.0 | 2.27% | 555.8 | 1.16% | motif file (matrix) |
svg |
80 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-2 | -5.057e+00 | 0.0290 | 31.0 | 3.91% | 1150.7 | 2.40% | motif file (matrix) |
svg |
81 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -5.026e+00 | 0.0295 | 46.0 | 5.81% | 1887.5 | 3.94% | motif file (matrix) |
svg |
82 |
| RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-2 | -5.017e+00 | 0.0295 | 5.0 | 0.63% | 70.8 | 0.15% | motif file (matrix) |
svg |
83 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-2 | -4.843e+00 | 0.0346 | 47.0 | 5.93% | 1958.1 | 4.09% | motif file (matrix) |
svg |
84 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-2 | -4.760e+00 | 0.0371 | 43.0 | 5.43% | 1766.9 | 3.69% | motif file (matrix) |
svg |
85 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-2 | -4.715e+00 | 0.0384 | 16.0 | 2.02% | 491.9 | 1.03% | motif file (matrix) |
svg |
86 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -4.707e+00 | 0.0384 | 52.0 | 6.57% | 2229.7 | 4.65% | motif file (matrix) |
svg |
87 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.686e+00 | 0.0386 | 28.0 | 3.54% | 1039.5 | 2.17% | motif file (matrix) |
svg |
88 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -4.656e+00 | 0.0393 | 182.0 | 22.98% | 9373.8 | 19.56% | motif file (matrix) |
svg |
89 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.623e+00 | 0.0402 | 59.0 | 7.45% | 2602.6 | 5.43% | motif file (matrix) |
svg |