Information for 5-CTGTAGGTCA (Motif 6)

T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A
Reverse Opposite:
A G C T A T C G C G T A A G T C G T A C G C A T G C T A G T A C C G T A A T C G
p-value:1e-15
log p-value:-3.635e+01
Information Content per bp:1.682
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif11.49%
Number of Background Sequences with motif2097.4
Percentage of Background Sequences with motif4.38%
Average Position of motif in Targets54.3 +/- 24.7bp
Average Position of motif in Background50.5 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CTGTAGGTCA
----AGGTCA
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CTGTAGGTCA
ATCAAGGTCA
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CTGTAGGTCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

Esrrg/MA0643.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CTGTAGGTCA-
-TCAAGGTCAT
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CTGTAGGTCA-
---AAGGTCAC
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGTAGGTCA-
-TCAAGGTCAN
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTGTAGGTCA
AAYTAGGTCA
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTGTAGGTCA
--TRAGGTCA
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGTAGGTCA--
-TCAAGGTCATA
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTGTAGGTCA
--AGRGGTCA
 T A G C G C A T A C T G C G A T C G T A C A T G C T A G G C A T T A G C T C G A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A