Information for 3-TCGCAAAGGATAC (Motif 8)

C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C
Reverse Opposite:
A C T G A G C T T C G A A G C T A G T C A G T C A C G T A C G T A C G T A C T G A T G C A T C G C G T A
p-value:1e-11
log p-value:-2.740e+01
Information Content per bp:1.831
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.7 +/- 29.4bp
Average Position of motif in Background66.0 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCGCAAAGGATAC---
TCGCGAAGGTTGTACT
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TCGCAAAGGATAC---
-----AAGGATATNTN
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCGCAAAGGATAC
---CAAAGGTCAG
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCGCAAAGGATAC---
TCTCAAAGGTCACCTG
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCGCAAAGGATAC
GTTGCCATGGNAAC
 A C G T C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCGCAAAGGATAC
ANGNAAAGGTCA-
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TCGCAAAGGATAC-
----CAAGGHCANV
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCGCAAAGGATAC-
TTGCCATGGCAACN
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TCGCAAAGGATAC
-----AAGGTCAC
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCGCAAAGGATAC
-AACAAAGG----
 C G A T A T G C A T C G A G T C T C G A C G T A C G T A A C T G A C T G C T G A A C G T C T G A A G T C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T