Information for 22-AAGTATGTCTGCT (Motif 41)

C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
Reverse Opposite:
C G T A C T A G A G T C C G T A C T A G C G T A G T A C C T G A A C G T C G T A A G T C A C G T A C G T
p-value:1e-6
log p-value:-1.545e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.0 +/- 24.0bp
Average Position of motif in Background70.1 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGTATGTCTGCT
--VBSYGTCTGG-
 C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AAGTATGTCTGCT
----CTGTCTGG-
 C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAGTATGTCTGCT
----TWGTCTGV-
 C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGTATGTCTGCT
TATAAGTAGGTCAA--
 A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGTATGTCTGCT----
NNTNNTGTCTGGNNTNG
 C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGTATGTCTGCT
AAGGATATNTN--
 C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAGTATGTCTGCT
AAYTAGGTCA---
 C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AAGTATGTCTGCT
CAGGTAAGTAT---
 A C G T C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AAGTATGTCTGCT
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AAGTATGTCTGCT
TTAAGTGCTT-----
 A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G C T A C T G A C G T A G T C A C G T A C T G A G T C C G A T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T