Information for 7-CTGCTGTGCTCAG (Motif 17)

A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G C G T A A C T G A G T C G T C A A G T C C T G A A C T G A G T C C G T A A T C G
p-value:1e-10
log p-value:-2.518e+01
Information Content per bp:1.897
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.6 +/- 31.5bp
Average Position of motif in Background61.7 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGCTCAG
NNTCCTGCTGTGNNN--
 A C G T A C G T A C G T A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGCTCAG
CCCCCTGCTGTG-----
 A C G T A C G T A C G T A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGCTCAG
TNTCCTGCTGTGNNG--
 A C G T A C G T A C G T A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CTGCTGTGCTCAG
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGCTCAG
TCNCCTGCTGNGNNN--
 A C G T A C G T A C G T A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGCTGTGCTCAG
CCTGCTGAGH----
 A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGCTGTGCTCAG---
CGAACAGTGCTCACTAT
 A C G T A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGCTGTGCTCAG----
CAGATGTGCACATACGT
 A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGCTGTGCTCAG
--GCTGTG-----
 A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CTGCTGTGCTCAG---
------TGCCCAGNHW
 A T G C A C G T A C T G A G T C A G C T A C T G A C G T A C T G A G T C G A C T A G T C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A