Information for 10-AGCTCGGAAA (Motif 32)

C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T G T A C A G T C A C T G C G T A A C T G A G T C A C G T
p-value:1e-7
log p-value:-1.761e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.4 +/- 16.2bp
Average Position of motif in Background57.9 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGCTCGGAAA----
AAACCTCGTAAAATTT
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AGCTCGGAAA--
-GCTCGTAAAAA
 C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGCTCGGAAA----
AAAGCTCGTAAAATTT
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PB0115.1_Ehf_2/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGCTCGGAAA-----
AAGATCGGAANTNNNA
 A C G T C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGCTCGGAAA-----
TTAGGTCGTAAAATTTC
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCTCGGAAA--
-GGTCGTAAAAA
 C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCTCGGAAA--
-AGTCGTAAAAA
 C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGCTCGGAAA---
-GGTCGTAAAATT
 C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGCTCGGAAA--
-GGTCGTAAAAT
 C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGCTCGGAAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C A C T G A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T