Information for 1-CTTGCCAYTC (Motif 3)

T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
Reverse Opposite:
T C A G T G C A T C G A A C G T A C T G T A C G T G A C G T C A C T G A A T C G
p-value:1e-14
log p-value:-3.277e+01
Information Content per bp:1.688
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif13.03%
Number of Background Sequences with motif2410.6
Percentage of Background Sequences with motif5.33%
Average Position of motif in Targets52.6 +/- 26.7bp
Average Position of motif in Background51.1 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTTGCCAYTC
CTTGGCAA--
 T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCCAYTC
NNTTGGCANN-
 A C G T T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTTGCCAYTC--
SCTGTCAVTCAV
 T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTTGCCAYTC
CGTGCCAAG-
 T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCCAYTC
GGTTGGCAT--
 A C G T T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTTGCCAYTC
--TGCCAA--
 T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCCAYTC
ARNTGACA---
 A C G T T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTTGCCAYTC--
NCTGTCAATCAN
 T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCCAYTC
NNACTTGCCTT--
 A C G T A C G T A C G T T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTTGCCAYTC
-YTGWCADY-
 T A G C G A C T A C G T A C T G A T G C G T A C G T C A A G C T A C G T A G T C
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T