Information for 5-AGGATGGCTG (Motif 24)

T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G
Reverse Opposite:
A T G C T C G A T A C G T A G C T A G C C T G A G C A T T G A C G T A C A C G T
p-value:1e-8
log p-value:-1.985e+01
Information Content per bp:1.648
Number of Target Sequences with motif157.0
Percentage of Target Sequences with motif22.24%
Number of Background Sequences with motif6329.2
Percentage of Background Sequences with motif14.01%
Average Position of motif in Targets49.7 +/- 25.0bp
Average Position of motif in Background51.1 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGATGGCTG-
CAAGATGGCGGC
 A C G T T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGATGGCTG-
CAAGATGGCGGC
 A C G T T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGGATGGCTG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGGATGGCTG-
---TWGTCTGV
 T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGGATGGCTG
-----NGCTN
 T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGATGGCTG--
ATGATKGATGRC
 T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGGATGGCTG---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AGGATGGCTG-
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGGATGGCTG-
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGATGGCTG--
-TAATGGCGGNC
 T G C A C A T G A C T G C G T A G A C T A T C G A T C G A T G C A G C T T A C G A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C