Information for 11-YGCMGSSACASRGCCA (Motif 20)

A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C G A T C T A G C A C G T A C T G A C G T A T C G A T C G G T A C A C G T A C T G A G T C C T G A
p-value:1e-9
log p-value:-2.216e+01
Information Content per bp:1.847
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 18.8bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YGCMGSSACASRGCCA--
--TTGGCANNNTGCCAAG
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YGCMGSSACASRGCCA
-CCAGGAACAG-----
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:YGCMGSSACASRGCCA-
---TGGCACCATGCCAA
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:YGCMGSSACASRGCCA
--CTGGCAGNCTGCCA
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--YGCMGSSACASRGCCA--
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:YGCMGSSACASRGCCA--
--------CAAGGHCANV
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.53
Offset:11
Orientation:reverse strand
Alignment:YGCMGSSACASRGCCA-
-----------TGCCAA
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:9
Orientation:forward strand
Alignment:YGCMGSSACASRGCCA--
---------CGTGCCAAG
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:YGCMGSSACASRGCCA-
-----GGACACACCCCC
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:YGCMGSSACASRGCCA
-------ACAAAG---
 A G C T A C T G A G T C G T A C A C T G A T G C A T G C G T C A A G T C C G T A A T C G C T A G A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T