Information for 2-CACACACGCTGAG (Motif 3)

A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
Reverse Opposite:
A T G C A C G T A T G C G C T A A T C G A T G C T C A G A C G T A C T G A C G T A C T G A C G T T C A G
p-value:1e-15
log p-value:-3.619e+01
Information Content per bp:1.782
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif22.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.1 +/- 19.7bp
Average Position of motif in Background57.5 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CACACACGCTGAG
AGCGGCACACACGCAA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CACACACGCTGAG-
----CCTGCTGAGH
A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACACACGCTGAG
CRCCCACGCA---
A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CACACACGCTGAG
GGACACACCCCC--
A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACACACGCTGAG
GTCACGCTCNCTGA-
A C G T A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACACACGCTGAG
YCCGCCCACGCN---
A C G T A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACACACGCTGAG
GGCCACACCCAN--
A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CACACACGCTGAG---
-TCNCCTGCTGNGNNN
A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Klf1/MA0493.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CACACACGCTGAG
GGCCACACCCA---
A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CACACACGCTGAG
CGAAGCACACAAAATA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C G T C A T G A C C G T A A G T C T A C G A T G C C G A T A T C G G T C A A T C G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T