Information for 10-CCCTGCCTGGCAG (Motif 18)

G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G
Reverse Opposite:
G A T C C G A T A T C G T A G C A G T C C G T A C T A G T A C G T A G C C G T A A C T G A C T G C A T G
p-value:1e-10
log p-value:-2.320e+01
Information Content per bp:1.740
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif147.9
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets60.6 +/- 21.4bp
Average Position of motif in Background48.9 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CCCTGCCTGGCAG
-----CTTGGCAA
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCCTGCCTGGCAG-
GTCATGCHTGRCTGS
 A C G T G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCCTGCCTGGCAG--
--CTGTCTGTCACCT
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCTGGCAG
NNACTTGCCTT----
 A C G T A C G T G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCCTGCCTGGCAG-
NNCTTCCNGGAAGN
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G A C G T
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCTGCCTGGCAG-
--BTGABTGACAGS
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCCTGCCTGGCAG--
---TGTCTGDCACCT
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCCTGCCTGGCAG-
----VGCTGWCAVB
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCCTGCCTGGCAG
--CTGTCTGG---
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCTGCCTGGCAG
--CTTCCNGGAA-
 G T A C T G A C G T A C G C A T A T C G A T G C A G T C C G A T T C A G A T C G A T G C C G T A C A T G
A C G T A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T