Information for 9-AGCATGCTTT (Motif 12)

C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
Reverse Opposite:
C T G A C G T A C T G A A T C G G T A C T C G A A C G T A C T G G T A C A C G T
p-value:1e-12
log p-value:-2.820e+01
Information Content per bp:1.843
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif95.5
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets53.1 +/- 24.4bp
Average Position of motif in Background50.9 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCATGCTTT
--CAAGCTT-
 C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGCATGCTTT
DCTCAGCAGG----
 A C G T A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGCATGCTTT
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AGCATGCTTT
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGCATGCTTT
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCATGCTTT
CAGCC------
 A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AGCATGCTTT
AAGTCAGCANTTTTN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGCATGCTTT------
TNNNATGATTTCNNCNN
 A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

MAFF/MA0495.1/Jaspar

Match Rank:9
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------AGCATGCTTT
GCTGAGTCAGCAATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGCATGCTTT
--CACGCA--
 C G T A A C T G G T A C C G T A A G C T A C T G A T G C A G C T G C A T A G C T
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T