Information for 7-KGAMAGCTCAGST (Motif 19)

C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
Reverse Opposite:
C G T A A T G C A G T C A C G T A C T G C G T A A C T G A G T C A G C T A C T G A C G T A G T C G T A C
p-value:1e-8
log p-value:-1.953e+01
Information Content per bp:1.887
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.9 +/- 29.3bp
Average Position of motif in Background45.5 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----KGAMAGCTCAGST
GATATTGACAGCTGCGT-
 A C G T A C G T A C G T A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KGAMAGCTCAGST
ANGNAAAGGTCA---
 A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--KGAMAGCTCAGST-
TCTCAAAGGTCACCTG
 A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--KGAMAGCTCAGST-
TCTCAAAGGTCACGAG
 A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Gfi1b/MA0483.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:KGAMAGCTCAGST
--AAATCACAGCA
 C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----KGAMAGCTCAGST
NTATTGACAGCTNNTT-
 A C G T A C G T A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----KGAMAGCTCAGST
GTATTGACAGCTNNTT-
 A C G T A C G T A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KGAMAGCTCAGST
TTGACAGC------
 A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----KGAMAGCTCAGST
GGATTGACAGGTCNTT-
 A C G T A C G T A C G T A C G T C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KGAMAGCTCAGST
-CAAAGGTCAG--
 C A G T A C T G C G T A T G A C C T G A A C T G A G T C C G A T A G T C C G T A A C T G A T C G A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T