Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 840)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47726)	% of Background Sequences with Motif
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-222	-5.113e+02	0.0000	271.0	32.26%	1097.7	2.30%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-217	-5.000e+02	0.0000	281.0	33.45%	1282.4	2.68%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-214	-4.949e+02	0.0000	279.0	33.21%	1279.1	2.68%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-213	-4.905e+02	0.0000	235.0	27.98%	753.5	1.58%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-210	-4.852e+02	0.0000	294.0	35.00%	1552.2	3.25%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-210	-4.852e+02	0.0000	292.0	34.76%	1521.3	3.18%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-206	-4.751e+02	0.0000	208.0	24.76%	534.4	1.12%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-200	-4.620e+02	0.0000	300.0	35.71%	1790.0	3.75%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-98	-2.261e+02	0.0000	120.0	14.29%	447.2	0.94%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-40	-9.239e+01	0.0000	129.0	15.36%	1812.6	3.79%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-38	-8.925e+01	0.0000	141.0	16.79%	2214.5	4.63%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-37	-8.614e+01	0.0000	121.0	14.40%	1705.7	3.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-34	-7.850e+01	0.0000	36.0	4.29%	98.9	0.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-30	-6.920e+01	0.0000	104.0	12.38%	1550.5	3.24%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-27	-6.219e+01	0.0000	28.0	3.33%	74.3	0.16%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-26	-5.992e+01	0.0000	55.0	6.55%	488.0	1.02%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-23	-5.472e+01	0.0000	28.0	3.33%	99.0	0.21%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-21	-5.026e+01	0.0000	100.0	11.90%	1858.4	3.89%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-21	-4.989e+01	0.0000	51.0	6.07%	516.4	1.08%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-17	-4.049e+01	0.0000	50.0	5.95%	622.8	1.30%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-14	-3.226e+01	0.0000	72.0	8.57%	1449.0	3.03%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-12	-2.983e+01	0.0000	85.0	10.12%	1983.5	4.15%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-12	-2.949e+01	0.0000	63.0	7.50%	1234.4	2.58%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-12	-2.881e+01	0.0000	67.0	7.98%	1387.8	2.90%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-11	-2.647e+01	0.0000	69.0	8.21%	1533.1	3.21%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-11	-2.597e+01	0.0000	20.0	2.38%	147.2	0.31%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-9	-2.290e+01	0.0000	45.0	5.36%	840.2	1.76%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-9	-2.196e+01	0.0000	41.0	4.88%	740.0	1.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-8	-2.021e+01	0.0000	73.0	8.69%	1933.1	4.05%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-8	-1.983e+01	0.0000	21.0	2.50%	233.0	0.49%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-8	-1.981e+01	0.0000	52.0	6.19%	1170.8	2.45%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-6	-1.559e+01	0.0000	62.0	7.38%	1727.6	3.62%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-6	-1.539e+01	0.0000	25.0	2.98%	417.8	0.87%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-6	-1.477e+01	0.0000	48.0	5.71%	1223.3	2.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-5	-1.364e+01	0.0000	58.0	6.90%	1670.1	3.50%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.335e+01	0.0000	66.0	7.86%	2016.4	4.22%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-5	-1.329e+01	0.0000	90.0	10.71%	3058.1	6.40%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-5	-1.307e+01	0.0000	43.0	5.12%	1109.3	2.32%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-5	-1.204e+01	0.0001	45.0	5.36%	1235.8	2.59%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-4	-1.121e+01	0.0001	83.0	9.88%	2909.6	6.09%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-4	-1.101e+01	0.0001	37.0	4.40%	974.8	2.04%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-4	-1.093e+01	0.0002	87.0	10.36%	3114.3	6.52%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.080e+01	0.0002	18.0	2.14%	317.6	0.66%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-4	-1.074e+01	0.0002	37.0	4.40%	987.1	2.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-4	-1.059e+01	0.0002	66.0	7.86%	2201.1	4.61%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-1.047e+01	0.0002	69.0	8.21%	2342.7	4.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-9.873e+00	0.0004	42.0	5.00%	1230.0	2.57%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.272e+00	0.0007	5.0	0.60%	25.2	0.05%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-8.461e+00	0.0016	27.0	3.21%	709.7	1.49%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-8.420e+00	0.0016	103.0	12.26%	4120.1	8.62%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-8.249e+00	0.0019	47.0	5.60%	1543.1	3.23%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.763e+00	0.0030	15.0	1.79%	304.3	0.64%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-3	-7.480e+00	0.0039	35.0	4.17%	1083.4	2.27%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-7.077e+00	0.0057	277.0	32.98%	13370.6	27.98%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-6.626e+00	0.0088	65.0	7.74%	2501.2	5.23%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-6.529e+00	0.0095	94.0	11.19%	3914.7	8.19%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-6.219e+00	0.0127	67.0	7.98%	2640.8	5.53%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-6.038e+00	0.0150	87.0	10.36%	3634.2	7.61%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-5.886e+00	0.0171	100.0	11.90%	4302.8	9.00%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-2	-5.867e+00	0.0172	105.0	12.50%	4556.6	9.54%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-5.839e+00	0.0174	53.0	6.31%	2018.5	4.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-5.817e+00	0.0175	14.0	1.67%	335.9	0.70%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.797e+00	0.0175	42.0	5.00%	1514.5	3.17%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-5.614e+00	0.0207	6.0	0.71%	82.3	0.17%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-2	-5.497e+00	0.0230	25.0	2.98%	789.0	1.65%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-5.467e+00	0.0233	94.0	11.19%	4063.9	8.50%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.445e+00	0.0235	8.0	0.95%	143.5	0.30%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.429e+00	0.0235	100.0	11.90%	4371.6	9.15%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-4.952e+00	0.0373	14.0	1.67%	371.1	0.78%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-4.868e+00	0.0400	72.0	8.57%	3052.2	6.39%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-4.802e+00	0.0421	175.0	20.83%	8393.6	17.57%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-4.793e+00	0.0421	35.0	4.17%	1284.2	2.69%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-4.676e+00	0.0465	7.0	0.83%	131.0	0.27%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-4.510e+00	0.0541	38.0	4.52%	1450.6	3.04%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.464e+00	0.0559	46.0	5.48%	1834.6	3.84%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-4.381e+00	0.0599	20.0	2.38%	648.2	1.36%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.285e+00	0.0651	38.0	4.52%	1473.7	3.08%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-4.265e+00	0.0656	37.0	4.40%	1428.7	2.99%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.250e+00	0.0657	27.0	3.21%	967.7	2.03%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-4.207e+00	0.0678	10.0	1.19%	252.0	0.53%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-4.198e+00	0.0678	23.0	2.74%	792.2	1.66%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-4.110e+00	0.0728	27.0	3.21%	979.8	2.05%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.109e+00	0.0728	73.0	8.69%	3216.0	6.73%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-4.104e+00	0.0728	20.0	2.38%	667.7	1.40%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-4.036e+00	0.0756	22.0	2.62%	760.1	1.59%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.022e+00	0.0758	88.0	10.48%	3994.1	8.36%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.948e+00	0.0807	18.0	2.14%	591.1	1.24%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.943e+00	0.0807	7.0	0.83%	152.5	0.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.909e+00	0.0821	52.0	6.19%	2195.7	4.60%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.812e+00	0.0894	48.0	5.71%	2011.1	4.21%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.729e+00	0.0960	113.0	13.45%	5351.7	11.20%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-3.710e+00	0.0969	90.0	10.71%	4155.3	8.70%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.707e+00	0.0969	52.0	6.19%	2223.8	4.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.704e+00	0.0969	29.0	3.45%	1109.2	2.32%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.684e+00	0.0969	53.0	6.31%	2276.2	4.76%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.611e+00	0.1025	9.0	1.07%	238.4	0.50%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.571e+00	0.1055	16.0	1.90%	530.8	1.11%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.507e+00	0.1114	14.0	1.67%	448.4	0.94%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.449e+00	0.1169	33.0	3.93%	1326.3	2.78%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.416e+00	0.1195	2.0	0.24%	16.4	0.03%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.387e+00	0.1218	11.0	1.31%	329.9	0.69%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.315e+00	0.1297	11.0	1.31%	333.4	0.70%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-3.271e+00	0.1341	31.0	3.69%	1250.3	2.62%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.228e+00	0.1388	28.0	3.33%	1111.9	2.33%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.220e+00	0.1388	36.0	4.29%	1499.9	3.14%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.163e+00	0.1453	8.0	0.95%	219.8	0.46%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.160e+00	0.1453	18.0	2.14%	650.4	1.36%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.143e+00	0.1454	97.0	11.55%	4639.0	9.71%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.107e+00	0.1494	10.0	1.19%	303.1	0.63%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.099e+00	0.1494	19.0	2.26%	701.0	1.47%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-3.096e+00	0.1494	5.0	0.60%	109.2	0.23%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.069e+00	0.1510	151.0	17.98%	7540.4	15.78%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.029e+00	0.1558	41.0	4.88%	1772.7	3.71%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.015e+00	0.1566	29.0	3.45%	1183.9	2.48%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.994e+00	0.1586	46.0	5.48%	2028.7	4.25%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.926e+00	0.1683	87.0	10.36%	4160.7	8.71%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.915e+00	0.1687	47.0	5.60%	2091.5	4.38%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.881e+00	0.1730	10.0	1.19%	316.9	0.66%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.849e+00	0.1771	15.0	1.79%	539.6	1.13%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.847e+00	0.1771	2.0	0.24%	22.4	0.05%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.835e+00	0.1771	64.0	7.62%	2977.9	6.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.795e+00	0.1808	5.0	0.60%	119.3	0.25%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.795e+00	0.1808	5.0	0.60%	119.3	0.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.771e+00	0.1838	55.0	6.55%	2524.9	5.28%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.759e+00	0.1845	12.0	1.43%	411.4	0.86%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.743e+00	0.1860	6.0	0.71%	160.0	0.33%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-2.722e+00	0.1885	30.0	3.57%	1268.1	2.65%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.716e+00	0.1885	7.0	0.83%	200.3	0.42%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.713e+00	0.1885	70.0	8.33%	3314.0	6.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.553e+00	0.2179	77.0	9.17%	3717.8	7.78%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-2.529e+00	0.2215	34.0	4.05%	1494.4	3.13%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.519e+00	0.2221	67.0	7.98%	3198.8	6.69%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.510e+00	0.2225	202.0	24.05%	10504.8	21.98%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.440e+00	0.2367	3.0	0.36%	59.4	0.12%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.435e+00	0.2367	50.0	5.95%	2328.8	4.87%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.405e+00	0.2416	29.0	3.45%	1261.2	2.64%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.376e+00	0.2468	29.0	3.45%	1265.5	2.65%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.372e+00	0.2468	6.0	0.71%	177.0	0.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.350e+00	0.2498	10.0	1.19%	351.4	0.74%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.340e+00	0.2505	55.0	6.55%	2607.6	5.46%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.315e+00	0.2550	33.0	3.93%	1476.7	3.09%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.301e+00	0.2567	36.0	4.29%	1631.3	3.41%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.279e+00	0.2605	56.0	6.67%	2672.6	5.59%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.226e+00	0.2730	27.0	3.21%	1186.4	2.48%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.212e+00	0.2750	12.0	1.43%	454.6	0.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.205e+00	0.2750	4.0	0.48%	103.6	0.22%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.204e+00	0.2750	38.0	4.52%	1750.5	3.66%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.135e+00	0.2908	186.0	22.14%	9763.6	20.43%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.123e+00	0.2924	41.0	4.88%	1920.9	4.02%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.121e+00	0.2924	32.0	3.81%	1456.2	3.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.120e+00	0.2924	5.0	0.60%	147.1	0.31%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.043e+00	0.3105	34.0	4.05%	1572.8	3.29%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.024e+00	0.3125	7.0	0.83%	239.6	0.50%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.024e+00	0.3125	7.0	0.83%	239.7	0.50%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.023e+00	0.3125	13.0	1.55%	519.4	1.09%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.987e+00	0.3201	56.0	6.67%	2737.3	5.73%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.974e+00	0.3221	3.0	0.36%	73.9	0.15%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.963e+00	0.3234	132.0	15.71%	6856.1	14.35%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.944e+00	0.3278	22.0	2.62%	975.0	2.04%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.942e+00	0.3278	11.0	1.31%	431.1	0.90%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.931e+00	0.3279	12.0	1.43%	480.5	1.01%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.922e+00	0.3288	1.0	0.12%	9.9	0.02%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.905e+00	0.3323	6.0	0.71%	202.2	0.42%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.833e+00	0.3551	14.0	1.67%	588.8	1.23%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.822e+00	0.3569	13.0	1.55%	540.9	1.13%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.800e+00	0.3625	22.0	2.62%	995.7	2.08%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.799e+00	0.3625	30.0	3.57%	1408.5	2.95%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.752e+00	0.3757	40.0	4.76%	1942.9	4.07%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.752e+00	0.3757	36.0	4.29%	1731.2	3.62%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.694e+00	0.3936	23.0	2.74%	1064.0	2.23%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.659e+00	0.4051	69.0	8.21%	3521.3	7.37%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.656e+00	0.4051	39.0	4.64%	1910.8	4.00%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.650e+00	0.4051	52.0	6.19%	2606.4	5.45%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.648e+00	0.4051	14.0	1.67%	610.5	1.28%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.632e+00	0.4066	42.0	5.00%	2075.9	4.34%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.632e+00	0.4066	14.0	1.67%	612.4	1.28%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.588e+00	0.4202	1.0	0.12%	13.2	0.03%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.582e+00	0.4205	30.0	3.57%	1449.0	3.03%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.529e+00	0.4406	50.0	5.95%	2530.7	5.30%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.526e+00	0.4406	73.0	8.69%	3780.4	7.91%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.487e+00	0.4547	24.0	2.86%	1151.5	2.41%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.422e+00	0.4826	64.0	7.62%	3322.5	6.95%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.411e+00	0.4851	13.0	1.55%	590.2	1.24%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.409e+00	0.4851	5.0	0.60%	190.7	0.40%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.404e+00	0.4851	27.0	3.21%	1327.0	2.78%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.393e+00	0.4860	171.0	20.36%	9259.7	19.38%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.371e+00	0.4942	12.0	1.43%	545.0	1.14%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.363e+00	0.4953	19.0	2.26%	910.6	1.91%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.352e+00	0.4984	29.0	3.45%	1444.0	3.02%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.319e+00	0.5124	3.0	0.36%	102.4	0.21%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.309e+00	0.5146	34.0	4.05%	1723.4	3.61%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.298e+00	0.5176	6.0	0.71%	248.9	0.52%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.291e+00	0.5186	13.0	1.55%	607.6	1.27%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.267e+00	0.5284	3.0	0.36%	105.9	0.22%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.257e+00	0.5311	95.0	11.31%	5091.5	10.66%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.255e+00	0.5311	86.0	10.24%	4593.1	9.61%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.246e+00	0.5316	21.0	2.50%	1038.5	2.17%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.230e+00	0.5376	42.0	5.00%	2179.4	4.56%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.213e+00	0.5438	52.0	6.19%	2732.4	5.72%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.203e+00	0.5465	10.0	1.19%	463.4	0.97%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.194e+00	0.5490	16.0	1.90%	781.6	1.64%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.150e+00	0.5705	28.0	3.33%	1437.2	3.01%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.146e+00	0.5705	5.0	0.60%	212.8	0.45%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.135e+00	0.5732	5.0	0.60%	213.3	0.45%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.117e+00	0.5808	35.0	4.17%	1828.2	3.83%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.114e+00	0.5808	28.0	3.33%	1446.6	3.03%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.090e+00	0.5915	7.0	0.83%	321.7	0.67%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.086e+00	0.5915	19.0	2.26%	963.4	2.02%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.085e+00	0.5915	17.0	2.02%	855.2	1.79%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.079e+00	0.5915	23.0	2.74%	1182.6	2.47%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.073e+00	0.5915	2.0	0.24%	69.1	0.14%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.068e+00	0.5915	63.0	7.50%	3392.2	7.10%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.066e+00	0.5915	1.0	0.12%	24.8	0.05%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.048e+00	0.5962	14.0	1.67%	701.0	1.47%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.034e+00	0.6022	27.0	3.21%	1412.5	2.96%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.025e+00	0.6048	7.0	0.83%	329.6	0.69%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.005e+00	0.6137	5.0	0.60%	226.8	0.47%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.883e-01	0.6215	26.0	3.10%	1369.6	2.87%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.858e-01	0.6215	11.0	1.31%	549.7	1.15%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-9.741e-01	0.6247	11.0	1.31%	551.6	1.15%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.633e-01	0.6286	30.0	3.57%	1597.4	3.34%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.510e-01	0.6335	11.0	1.31%	555.6	1.16%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.479e-01	0.6335	9.0	1.07%	448.0	0.94%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-9.433e-01	0.6335	192.0	22.86%	10705.2	22.40%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.361e-01	0.6344	2.0	0.24%	77.9	0.16%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.954e-01	0.6579	14.0	1.67%	730.1	1.53%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.787e-01	0.6660	35.0	4.17%	1902.0	3.98%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-8.655e-01	0.6718	69.0	8.21%	3815.9	7.99%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.471e-01	0.6814	4.0	0.48%	190.2	0.40%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.169e-01	0.6992	3.0	0.36%	139.3	0.29%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-8.064e-01	0.7035	28.0	3.33%	1534.3	3.21%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.028e-01	0.7035	27.0	3.21%	1479.4	3.10%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.925e-01	0.7073	54.0	6.43%	3004.4	6.29%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.829e-01	0.7110	11.0	1.31%	588.0	1.23%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.814e-01	0.7110	7.0	0.83%	364.2	0.76%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.799e-01	0.7110	8.0	0.95%	420.0	0.88%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.583e-01	0.7195	56.0	6.67%	3133.1	6.56%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.577e-01	0.7195	14.0	1.67%	761.4	1.59%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.406e-01	0.7262	11.0	1.31%	596.8	1.25%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.111e-01	0.7448	7.0	0.83%	376.3	0.79%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.045e-01	0.7466	15.0	1.79%	831.7	1.74%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.039e-01	0.7466	83.0	9.88%	4694.6	9.82%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.767e-01	0.7614	36.0	4.29%	2035.5	4.26%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.761e-01	0.7614	2.0	0.24%	97.7	0.20%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.761e-01	0.7614	2.0	0.24%	97.1	0.20%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.697e-01	0.7614	10.0	1.19%	556.0	1.16%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.523e-01	0.7675	42.0	5.00%	2388.3	5.00%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.488e-01	0.7675	4.0	0.48%	215.7	0.45%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.341e-01	0.7754	5.0	0.60%	275.1	0.58%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.224e-01	0.7814	24.0	2.86%	1371.6	2.87%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.020e-01	0.7943	4.0	0.48%	222.3	0.47%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.970e-01	0.7951	3.0	0.36%	164.6	0.34%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.942e-01	0.7951	11.0	1.31%	631.1	1.32%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.936e-01	0.7951	18.0	2.14%	1036.6	2.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-5.798e-01	0.7994	28.0	3.33%	1618.8	3.39%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.774e-01	0.7994	28.0	3.33%	1619.0	3.39%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.619e-01	0.8075	1.0	0.12%	48.0	0.10%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.515e-01	0.8127	2.0	0.24%	110.3	0.23%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.506e-01	0.8127	42.0	5.00%	2439.3	5.10%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.334e-01	0.8212	22.0	2.62%	1290.8	2.70%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.292e-01	0.8216	7.0	0.83%	413.9	0.87%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.046e-01	0.8388	18.0	2.14%	1068.0	2.24%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.917e-01	0.8464	18.0	2.14%	1073.6	2.25%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.833e-01	0.8504	3.0	0.36%	181.1	0.38%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.705e-01	0.8549	4.0	0.48%	245.1	0.51%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.705e-01	0.8549	4.0	0.48%	245.3	0.51%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.602e-01	0.8604	12.0	1.43%	730.2	1.53%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.483e-01	0.8675	76.0	9.05%	4472.3	9.36%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.482e-01	0.8675	20.0	2.38%	1209.2	2.53%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.322e-01	0.8751	3.0	0.36%	190.5	0.40%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.268e-01	0.8766	6.0	0.71%	378.5	0.79%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.229e-01	0.8767	15.0	1.79%	923.7	1.93%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.175e-01	0.8783	11.0	1.31%	685.4	1.43%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.124e-01	0.8796	36.0	4.29%	2170.5	4.54%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.095e-01	0.8796	1.0	0.12%	62.9	0.13%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.554e-01	0.9244	14.0	1.67%	892.0	1.87%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.528e-01	0.9244	59.0	7.02%	3564.8	7.46%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.491e-01	0.9244	9.0	1.07%	588.5	1.23%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.457e-01	0.9244	3.0	0.36%	208.1	0.44%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.456e-01	0.9244	145.0	17.26%	8570.2	17.94%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.410e-01	0.9244	6.0	0.71%	404.0	0.85%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.376e-01	0.9244	24.0	2.86%	1505.7	3.15%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.254e-01	0.9289	5.0	0.60%	344.4	0.72%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.194e-01	0.9312	2.0	0.24%	146.1	0.31%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.091e-01	0.9376	3.0	0.36%	217.8	0.46%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.078e-01	0.9376	24.0	2.86%	1524.1	3.19%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.072e-01	0.9376	12.0	1.43%	792.1	1.66%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.039e-01	0.9376	58.0	6.90%	3551.3	7.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.964e-01	0.9376	2.0	0.24%	151.2	0.32%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.918e-01	0.9376	5.0	0.60%	355.4	0.74%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.904e-01	0.9376	3.0	0.36%	222.1	0.46%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.752e-01	0.9467	2.0	0.24%	156.4	0.33%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.614e-01	0.9565	37.0	4.40%	2343.3	4.90%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.613e-01	0.9565	4.0	0.48%	299.3	0.63%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.597e-01	0.9565	81.0	9.64%	4956.1	10.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.596e-01	0.9565	22.0	2.62%	1437.0	3.01%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.555e-01	0.9565	18.0	2.14%	1193.4	2.50%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.529e-01	0.9565	7.0	0.83%	501.7	1.05%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.480e-01	0.9565	2.0	0.24%	163.4	0.34%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.471e-01	0.9565	12.0	1.43%	824.0	1.72%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.317e-01	0.9592	84.0	10.00%	5171.4	10.82%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.285e-01	0.9592	59.0	7.02%	3694.5	7.73%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.251e-01	0.9592	6.0	0.71%	448.1	0.94%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.222e-01	0.9592	16.0	1.90%	1092.8	2.29%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.175e-01	0.9601	8.0	0.95%	585.0	1.22%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.123e-01	0.9620	1.0	0.12%	94.8	0.20%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.107e-01	0.9620	2.0	0.24%	174.5	0.37%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.102e-01	0.9620	13.0	1.55%	911.9	1.91%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.018e-01	0.9627	13.0	1.55%	917.5	1.92%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.988e-01	0.9627	14.0	1.67%	983.7	2.06%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.986e-01	0.9627	2.0	0.24%	178.1	0.37%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.925e-01	0.9627	1.0	0.12%	99.5	0.21%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.871e-01	0.9645	4.0	0.48%	329.4	0.69%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.842e-01	0.9645	85.0	10.12%	5305.8	11.10%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.819e-01	0.9645	13.0	1.55%	932.3	1.95%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.742e-01	0.9677	6.0	0.71%	475.4	0.99%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.685e-01	0.9702	68.0	8.10%	4320.0	9.04%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.669e-01	0.9702	57.0	6.79%	3661.6	7.66%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.423e-01	0.9897	32.0	3.81%	2172.8	4.55%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.393e-01	0.9897	2.0	0.24%	202.8	0.42%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.278e-01	0.9979	8.0	0.95%	646.8	1.35%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.248e-01	0.9979	3.0	0.36%	289.9	0.61%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.143e-01	1.0000	5.0	0.60%	446.6	0.93%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.063e-01	1.0000	23.0	2.74%	1659.9	3.47%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.052e-01	1.0000	2.0	0.24%	221.8	0.46%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.052e-01	1.0000	2.0	0.24%	221.7	0.46%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-9.747e-02	1.0000	1.0	0.12%	135.7	0.28%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.399e-02	1.0000	3.0	0.36%	311.2	0.65%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.288e-02	1.0000	4.0	0.48%	390.3	0.82%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-9.223e-02	1.0000	91.0	10.83%	5874.8	12.29%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.807e-02	1.0000	6.0	0.71%	544.7	1.14%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.174e-02	1.0000	2.0	0.24%	238.7	0.50%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.934e-02	1.0000	44.0	5.24%	3041.1	6.36%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.415e-02	1.0000	11.0	1.31%	917.4	1.92%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-6.422e-02	1.0000	5.0	0.60%	499.1	1.04%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.301e-02	1.0000	59.0	7.02%	4024.9	8.42%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.207e-02	1.0000	17.0	2.02%	1349.1	2.82%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.168e-02	1.0000	58.0	6.90%	3967.5	8.30%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.704e-02	1.0000	6.0	0.71%	586.5	1.23%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.324e-02	1.0000	65.0	7.74%	4482.0	9.38%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.249e-02	1.0000	101.0	12.02%	6694.8	14.01%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.344e-02	1.0000	32.0	3.81%	2496.9	5.23%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.084e-02	1.0000	5.0	0.60%	651.6	1.36%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.059e-02	1.0000	10.0	1.19%	1057.7	2.21%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.333e-03	1.0000	1.0	0.12%	279.7	0.59%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-7.126e-03	1.0000	64.0	7.62%	4786.0	10.02%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.698e-03	1.0000	3.0	0.36%	505.1	1.06%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.289e-03	1.0000	7.0	0.83%	866.5	1.81%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.174e-03	1.0000	60.0	7.14%	4554.7	9.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.983e-03	1.0000	139.0	16.55%	9544.1	19.97%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.154e-03	1.0000	6.0	0.71%	816.3	1.71%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.667e-03	1.0000	4.0	0.48%	668.9	1.40%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.089e-03	1.0000	21.0	2.50%	2058.2	4.31%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.391e-03	1.0000	67.0	7.98%	5265.1	11.02%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.720e-04	1.0000	7.0	0.83%	1041.7	2.18%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	33.9	0.07%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	28.5	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	12.7	0.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	27.1	0.06%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	27.1	0.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	12.2	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	41.5	0.09%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	37.5	0.08%