Information for 5-AGATCACAATGGGAGA (Motif 21)

C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C T G C G T A A C G T A G T C A C G T
p-value:1e-3
log p-value:-7.413e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 25.2bp
Average Position of motif in Background46.0 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA-
NNTNNACAATGGGANNN
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
----AACAAAGG----
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
--VRAACAATGG----
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
----GACAATGNN---
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
----RACAAWGG----
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
--RNAACAATGG----
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
---GAACAATGGN---
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGATCACAATGGGAGA
CTCACACAATGGCGC-
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
--VRRACAAWGG----
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGATCACAATGGGAGA
---GAACAATGG----
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T