Information for 5-TGCWTTAGGGACW (Motif 8)

G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
Reverse Opposite:
C G T A A C T G A C G T A G T C A G T C G T A C A C G T C G T A C G T A C G T A C T A G A G T C C G T A
p-value:1e-11
log p-value:-2.654e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.3 +/- 21.8bp
Average Position of motif in Background61.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGCWTTAGGGACW
TGATTTATGGCC-
 G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCWTTAGGGACW
TGATTTATGGCC-
 G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCWTTAGGGACW
DGWTTTATGRCN-
 G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCWTTAGGGACW
NTGATTTATGGCC-
 A C G T G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCWTTAGGGACW
NNGGATTAGN----
 A C G T G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCWTTAGGGACW
NGGGATTA------
 A C G T G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCWTTAGGGACW
TGATTTATGGC--
 G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGCWTTAGGGACW-
--GGTTAGAGACCT
 G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T A C G T
A C G T A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGCWTTAGGGACW
-GGATTAGC----
 G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGCWTTAGGGACW
GNGGATTAGN----
 A C G T G C A T A C T G A G T C C G A T A C G T A C G T C G T A A C T G C T A G C T A G G T C A G T A C C G A T
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T A C G T