Information for 12-STTRRATTKTYGS (Motif 19)

A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G
Reverse Opposite:
A T G C A G T C T C G A C G T A G T C A C G T A C G T A C G A T A G C T A G T C C G T A C G T A T A C G
p-value:1e-8
log p-value:-1.967e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.1 +/- 27.6bp
Average Position of motif in Background51.9 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-STTRRATTKTYGS---
GGAAAAATTGTTAGGAA
 A C G T A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:STTRRATTKTYGS
-----ATTGTT--
 A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:STTRRATTKTYGS---
--AAAATTGTTATGAA
 A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:STTRRATTKTYGS
-TTGACTTTT---
 A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G
A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-STTRRATTKTYGS-
NNATNAATTGTTTNN
 A C G T A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:STTRRATTKTYGS----
-TTCAATTGTTCTAAAA
 A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:STTRRATTKTYGS
-----ATTGTTA-
 A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-STTRRATTKTYGS--
ANNTCCATTGTTCNNN
 A C G T A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:STTRRATTKTYGS----
AATCAATTGTTCCGCTA
 A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----STTRRATTKTYGS
NNNTATTGAATTGNNN-
 A C G T A C G T A C G T A C G T A T G C A C G T A C G T C T A G C T G A C G T A A C G T A C G T A C G T A C G T A G C T A C T G A T C G
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T