Information for 5-CCTTCCTTTGCAG (Motif 8)

A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G
Reverse Opposite:
G T A C A C G T A T C G A T G C G T C A C T G A C G T A A C T G C T A G T G C A G T C A C T A G C T A G
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.785
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif23.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets36.6 +/- 23.7bp
Average Position of motif in Background39.2 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCTTCCTTTGCAG--
--TTCATTTGCATAT
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T A C G T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG-
----NNTTGGCANN
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG-
--CTCATTTGCATW
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T
A C G T A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG-
----CCTTTGAWGT
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG-
--BTVATTWGCATA
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T
A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CCTTCCTTTGCAG--
-----ATTTGCATAA
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG----
-TNTAATTTGCATANNN
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG----
-TNTAATTTGCATACNA
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG----
-TNTAATTTGCATACNA
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CCTTCCTTTGCAG
-----CTTGGCAA
 A G T C A G T C A C G T A C G T A G T C G T A C A C G T A G C T A C G T A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A