Information for 5-CTAGTGGYCA (Motif 4)

A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
Reverse Opposite:
A C G T A T C G T C G A A T G C A G T C C T G A A G T C G C A T C T G A A C T G
p-value:1e-11
log p-value:-2.564e+01
Information Content per bp:1.761
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif199.1
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets55.3 +/- 24.2bp
Average Position of motif in Background47.5 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTAGTGGYCA
--AGRGGTCA
 A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.66
Offset:-9
Orientation:reverse strand
Alignment:---------CTAGTGGYCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGGYCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.65
Offset:-10
Orientation:forward strand
Alignment:----------CTAGTGGYCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGGYCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTAGTGGYCA
CTAATKGV--
 A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGGYCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTAGTGGYCA----
-CAAAGGTCAAGGG
 A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTAGTGGYCA
--TRAGGTCA
 A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTAGTGGYCA
----AGGTCA
 A G T C A G C T C G T A C T A G G A C T A C T G A T C G A G C T A T G C G T C A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A