Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 776)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47381)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-67	-1.543e+02	0.0000	70.0	9.02%	199.0	0.42%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-41	-9.489e+01	0.0000	63.0	8.12%	375.1	0.79%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-36	-8.409e+01	0.0000	179.0	23.07%	3847.2	8.11%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-34	-8.012e+01	0.0000	119.0	15.34%	1903.0	4.01%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-33	-7.773e+01	0.0000	130.0	16.75%	2302.2	4.85%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-32	-7.543e+01	0.0000	112.0	14.43%	1786.6	3.77%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-32	-7.517e+01	0.0000	135.0	17.40%	2531.1	5.34%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-32	-7.409e+01	0.0000	104.0	13.40%	1574.1	3.32%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-29	-6.804e+01	0.0000	94.0	12.11%	1399.9	2.95%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-28	-6.653e+01	0.0000	120.0	15.46%	2247.6	4.74%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-24	-5.711e+01	0.0000	75.0	9.66%	1063.0	2.24%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-24	-5.628e+01	0.0000	75.0	9.66%	1077.1	2.27%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-24	-5.593e+01	0.0000	82.0	10.57%	1286.8	2.71%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-23	-5.484e+01	0.0000	90.0	11.60%	1555.0	3.28%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-23	-5.478e+01	0.0000	69.0	8.89%	938.5	1.98%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-23	-5.453e+01	0.0000	48.0	6.19%	435.6	0.92%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-23	-5.329e+01	0.0000	55.0	7.09%	605.0	1.28%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-22	-5.211e+01	0.0000	86.0	11.08%	1492.3	3.15%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-22	-5.156e+01	0.0000	80.0	10.31%	1318.2	2.78%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-20	-4.683e+01	0.0000	33.0	4.25%	220.5	0.46%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-19	-4.525e+01	0.0000	39.0	5.03%	346.9	0.73%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-16	-3.817e+01	0.0000	85.0	10.95%	1838.1	3.87%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-16	-3.771e+01	0.0000	44.0	5.67%	558.2	1.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-15	-3.563e+01	0.0000	46.0	5.93%	646.3	1.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-14	-3.401e+01	0.0000	25.0	3.22%	181.9	0.38%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-13	-3.006e+01	0.0000	74.0	9.54%	1708.3	3.60%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-11	-2.653e+01	0.0000	68.0	8.76%	1611.7	3.40%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-11	-2.651e+01	0.0000	83.0	10.70%	2197.0	4.63%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-10	-2.420e+01	0.0000	64.0	8.25%	1547.8	3.26%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-10	-2.352e+01	0.0000	20.0	2.58%	182.8	0.39%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.272e+01	0.0000	28.0	3.61%	385.1	0.81%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-9	-2.168e+01	0.0000	41.0	5.28%	804.7	1.70%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-7	-1.738e+01	0.0000	51.0	6.57%	1319.9	2.78%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-7	-1.646e+01	0.0000	26.0	3.35%	454.7	0.96%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-6	-1.586e+01	0.0000	63.0	8.12%	1887.4	3.98%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.575e+01	0.0000	12.0	1.55%	99.8	0.21%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-6	-1.565e+01	0.0000	12.0	1.55%	100.6	0.21%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-6	-1.562e+01	0.0000	76.0	9.79%	2472.3	5.21%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-6	-1.553e+01	0.0000	112.0	14.43%	4169.3	8.79%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.296e+01	0.0000	21.0	2.71%	382.0	0.81%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-4	-1.112e+01	0.0001	119.0	15.34%	4946.6	10.43%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-4	-1.082e+01	0.0002	208.0	26.80%	9767.2	20.59%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-1.077e+01	0.0002	56.0	7.22%	1891.3	3.99%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.050e+01	0.0002	9.0	1.16%	92.5	0.20%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-4	-1.044e+01	0.0002	51.0	6.57%	1687.2	3.56%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-4	-9.557e+00	0.0006	63.0	8.12%	2310.8	4.87%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-4	-9.417e+00	0.0006	29.0	3.74%	798.6	1.68%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.263e+00	0.0007	4.0	0.52%	14.8	0.03%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-4	-9.256e+00	0.0007	191.0	24.61%	9071.5	19.12%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-3	-9.189e+00	0.0007	14.0	1.80%	253.8	0.54%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-9.187e+00	0.0007	21.0	2.71%	496.1	1.05%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-9.132e+00	0.0008	53.0	6.83%	1872.8	3.95%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-3	-9.105e+00	0.0008	69.0	8.89%	2639.2	5.56%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-3	-9.085e+00	0.0008	52.0	6.70%	1829.7	3.86%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.650e+00	0.0012	39.0	5.03%	1267.7	2.67%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-8.578e+00	0.0012	93.0	11.98%	3898.5	8.22%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.329e+00	0.0015	21.0	2.71%	529.7	1.12%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-3	-8.224e+00	0.0017	26.0	3.35%	733.5	1.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-3	-7.692e+00	0.0028	27.0	3.48%	802.6	1.69%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-7.575e+00	0.0031	29.0	3.74%	894.2	1.88%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-3	-7.469e+00	0.0034	22.0	2.84%	606.9	1.28%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-3	-7.243e+00	0.0042	26.0	3.35%	784.1	1.65%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-7.203e+00	0.0043	83.0	10.70%	3546.6	7.48%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-3	-7.074e+00	0.0048	39.0	5.03%	1377.4	2.90%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-6.998e+00	0.0051	61.0	7.86%	2449.2	5.16%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-6.746e+00	0.0065	5.0	0.64%	47.0	0.10%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-6.598e+00	0.0074	3.0	0.39%	13.9	0.03%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-2	-6.420e+00	0.0087	26.0	3.35%	832.5	1.75%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-6.348e+00	0.0092	36.0	4.64%	1293.2	2.73%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-6.329e+00	0.0093	19.0	2.45%	538.8	1.14%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.923e+00	0.0137	12.0	1.55%	280.0	0.59%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-5.753e+00	0.0160	50.0	6.44%	2029.1	4.28%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.706e+00	0.0166	64.0	8.25%	2748.2	5.79%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-5.694e+00	0.0166	59.0	7.60%	2492.7	5.25%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.679e+00	0.0166	24.0	3.09%	790.2	1.67%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-5.567e+00	0.0183	6.0	0.77%	89.0	0.19%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.321e+00	0.0231	51.0	6.57%	2127.2	4.48%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.312e+00	0.0231	28.0	3.61%	999.4	2.11%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-5.198e+00	0.0255	43.0	5.54%	1737.9	3.66%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-5.127e+00	0.0270	88.0	11.34%	4102.8	8.65%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-4.751e+00	0.0388	47.0	6.06%	1989.9	4.19%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-4.715e+00	0.0398	49.0	6.31%	2096.3	4.42%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-4.681e+00	0.0406	33.0	4.25%	1293.8	2.73%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-4.650e+00	0.0414	33.0	4.25%	1296.2	2.73%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-4.631e+00	0.0417	42.0	5.41%	1748.3	3.69%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.584e+00	0.0432	40.0	5.15%	1652.5	3.48%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-4.571e+00	0.0433	5.0	0.64%	79.9	0.17%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.492e+00	0.0463	16.0	2.06%	509.3	1.07%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-4.424e+00	0.0490	61.0	7.86%	2763.1	5.82%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.343e+00	0.0525	26.0	3.35%	983.2	2.07%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-4.234e+00	0.0580	9.0	1.16%	229.0	0.48%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-4.207e+00	0.0589	60.0	7.73%	2742.9	5.78%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.094e+00	0.0652	17.0	2.19%	579.5	1.22%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-4.011e+00	0.0701	11.0	1.42%	320.4	0.68%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.891e+00	0.0782	46.0	5.93%	2046.8	4.31%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.889e+00	0.0782	69.0	8.89%	3278.5	6.91%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.871e+00	0.0782	18.0	2.32%	641.0	1.35%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.844e+00	0.0787	6.0	0.77%	130.4	0.27%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.844e+00	0.0787	6.0	0.77%	130.4	0.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-3.780e+00	0.0830	158.0	20.36%	8315.8	17.53%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-3.771e+00	0.0830	4.0	0.52%	66.0	0.14%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-3.666e+00	0.0913	2.0	0.26%	15.8	0.03%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-3.613e+00	0.0953	3.0	0.39%	39.6	0.08%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.582e+00	0.0973	4.0	0.52%	69.7	0.15%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.580e+00	0.0973	17.0	2.19%	616.1	1.30%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.537e+00	0.0999	25.0	3.22%	1009.9	2.13%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.530e+00	0.0999	14.0	1.80%	480.4	1.01%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.516e+00	0.1002	83.0	10.70%	4119.8	8.68%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.370e+00	0.1149	23.0	2.96%	926.3	1.95%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.302e+00	0.1218	19.0	2.45%	735.7	1.55%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.286e+00	0.1227	29.0	3.74%	1239.7	2.61%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.258e+00	0.1250	25.0	3.22%	1038.6	2.19%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.241e+00	0.1260	110.0	14.18%	5703.1	12.02%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.205e+00	0.1295	20.0	2.58%	793.9	1.67%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.195e+00	0.1296	85.0	10.95%	4299.6	9.06%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.171e+00	0.1306	8.0	1.03%	235.2	0.50%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.171e+00	0.1306	8.0	1.03%	235.5	0.50%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.090e+00	0.1403	4.0	0.52%	81.3	0.17%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.071e+00	0.1418	5.0	0.64%	118.9	0.25%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.062e+00	0.1420	154.0	19.85%	8288.7	17.47%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.015e+00	0.1476	25.0	3.22%	1065.2	2.25%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-2.978e+00	0.1518	141.0	18.17%	7558.9	15.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.974e+00	0.1518	2.0	0.26%	22.4	0.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.971e+00	0.1518	6.0	0.77%	162.0	0.34%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.928e+00	0.1558	5.0	0.64%	123.9	0.26%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.895e+00	0.1597	13.0	1.68%	479.1	1.01%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.891e+00	0.1597	17.0	2.19%	674.6	1.42%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.823e+00	0.1690	20.0	2.58%	831.9	1.75%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.819e+00	0.1690	5.0	0.64%	127.8	0.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.743e+00	0.1803	12.0	1.55%	443.9	0.94%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.733e+00	0.1807	240.0	30.93%	13473.5	28.40%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.712e+00	0.1831	76.0	9.79%	3902.4	8.23%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.671e+00	0.1894	13.0	1.68%	497.5	1.05%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.636e+00	0.1945	19.0	2.45%	800.5	1.69%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.585e+00	0.2032	45.0	5.80%	2197.7	4.63%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.572e+00	0.2044	29.0	3.74%	1331.7	2.81%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.564e+00	0.2047	28.0	3.61%	1279.3	2.70%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.514e+00	0.2135	21.0	2.71%	917.9	1.93%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-2.478e+00	0.2197	36.0	4.64%	1723.0	3.63%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.476e+00	0.2197	27.0	3.48%	1238.1	2.61%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.421e+00	0.2293	35.0	4.51%	1678.3	3.54%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.409e+00	0.2305	23.0	2.96%	1035.4	2.18%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-2.408e+00	0.2305	31.0	3.99%	1463.5	3.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.340e+00	0.2434	10.0	1.29%	379.0	0.80%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.338e+00	0.2434	31.0	3.99%	1474.4	3.11%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.335e+00	0.2434	14.0	1.80%	577.1	1.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.333e+00	0.2434	45.0	5.80%	2245.7	4.73%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.328e+00	0.2434	127.0	16.37%	6948.1	14.65%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.316e+00	0.2434	3.0	0.39%	67.7	0.14%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.271e+00	0.2505	28.0	3.61%	1322.5	2.79%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.267e+00	0.2505	20.0	2.58%	896.0	1.89%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.265e+00	0.2505	6.0	0.77%	195.8	0.41%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.245e+00	0.2520	28.0	3.61%	1326.7	2.80%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.238e+00	0.2521	45.0	5.80%	2264.2	4.77%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.238e+00	0.2521	27.0	3.48%	1274.0	2.69%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.193e+00	0.2605	9.0	1.16%	341.6	0.72%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.183e+00	0.2612	50.0	6.44%	2556.6	5.39%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.172e+00	0.2626	37.0	4.77%	1832.4	3.86%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.142e+00	0.2689	22.0	2.84%	1018.1	2.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.031e+00	0.2984	84.0	10.82%	4541.6	9.57%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.006e+00	0.3041	2.0	0.26%	39.8	0.08%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.984e+00	0.3089	30.0	3.87%	1480.0	3.12%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.948e+00	0.3183	13.0	1.68%	566.3	1.19%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.889e+00	0.3357	2.0	0.26%	42.3	0.09%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.881e+00	0.3362	3.0	0.39%	82.9	0.17%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.838e+00	0.3491	30.0	3.87%	1506.8	3.18%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.823e+00	0.3523	92.0	11.86%	5074.5	10.70%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.804e+00	0.3568	1.0	0.13%	11.4	0.02%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.765e+00	0.3687	203.0	26.16%	11683.3	24.63%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.757e+00	0.3694	24.0	3.09%	1187.9	2.50%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.732e+00	0.3768	58.0	7.47%	3125.2	6.59%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.703e+00	0.3855	41.0	5.28%	2156.3	4.55%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.692e+00	0.3873	3.0	0.39%	90.7	0.19%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.687e+00	0.3873	42.0	5.41%	2217.9	4.68%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.634e+00	0.4058	37.0	4.77%	1944.1	4.10%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.632e+00	0.4058	8.0	1.03%	340.0	0.72%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.584e+00	0.4218	4.0	0.52%	142.2	0.30%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.571e+00	0.4252	8.0	1.03%	346.0	0.73%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.570e+00	0.4252	84.0	10.82%	4694.5	9.90%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.567e+00	0.4252	5.0	0.64%	192.6	0.41%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.561e+00	0.4252	11.0	1.42%	505.6	1.07%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.522e+00	0.4365	6.0	0.77%	246.8	0.52%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.520e+00	0.4365	32.0	4.12%	1685.2	3.55%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.502e+00	0.4406	64.0	8.25%	3544.3	7.47%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.498e+00	0.4406	78.0	10.05%	4368.0	9.21%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.484e+00	0.4436	26.0	3.35%	1351.9	2.85%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.478e+00	0.4438	28.0	3.61%	1466.7	3.09%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.453e+00	0.4528	6.0	0.77%	252.8	0.53%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.434e+00	0.4588	66.0	8.51%	3684.2	7.77%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.360e+00	0.4917	11.0	1.42%	532.0	1.12%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.347e+00	0.4954	27.0	3.48%	1438.0	3.03%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.346e+00	0.4954	23.0	2.96%	1209.5	2.55%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.330e+00	0.4988	10.0	1.29%	480.3	1.01%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.296e+00	0.5135	18.0	2.32%	934.1	1.97%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.293e+00	0.5135	10.0	1.29%	485.6	1.02%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.285e+00	0.5136	19.0	2.45%	993.6	2.09%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.261e+00	0.5234	11.0	1.42%	545.8	1.15%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.252e+00	0.5254	8.0	1.03%	380.0	0.80%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.234e+00	0.5326	3.0	0.39%	115.2	0.24%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.216e+00	0.5396	4.0	0.52%	168.1	0.35%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.200e+00	0.5453	10.0	1.29%	498.3	1.05%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.190e+00	0.5483	39.0	5.03%	2178.4	4.59%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.184e+00	0.5486	46.0	5.93%	2592.0	5.46%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.173e+00	0.5519	70.0	9.02%	4019.7	8.47%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.166e+00	0.5532	23.0	2.96%	1249.9	2.63%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.166e+00	0.5532	8.0	1.03%	391.9	0.83%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.148e+00	0.5578	30.0	3.87%	1662.1	3.50%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.115e+00	0.5738	53.0	6.83%	3031.7	6.39%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.107e+00	0.5757	86.0	11.08%	5004.4	10.55%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.104e+00	0.5757	16.0	2.06%	857.1	1.81%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.101e+00	0.5757	10.0	1.29%	513.4	1.08%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.098e+00	0.5757	50.0	6.44%	2859.7	6.03%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.084e+00	0.5779	16.0	2.06%	861.1	1.82%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.072e+00	0.5820	19.0	2.45%	1038.2	2.19%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.067e+00	0.5824	4.0	0.52%	181.2	0.38%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.050e+00	0.5897	15.0	1.93%	810.0	1.71%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.041e+00	0.5924	3.0	0.39%	129.4	0.27%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.037e+00	0.5924	32.0	4.12%	1812.5	3.82%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.036e+00	0.5924	4.0	0.52%	184.2	0.39%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.016e+00	0.5989	30.0	3.87%	1700.4	3.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.000e+00	0.6057	6.0	0.77%	300.8	0.63%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.924e-01	0.6078	9.0	1.16%	473.0	1.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-9.775e-01	0.6142	118.0	15.21%	6999.1	14.75%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.733e-01	0.6142	1.0	0.13%	29.7	0.06%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.470e-01	0.6275	6.0	0.77%	307.4	0.65%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.288e-01	0.6362	28.0	3.61%	1608.1	3.39%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.206e-01	0.6387	5.0	0.64%	253.6	0.53%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.199e-01	0.6387	62.0	7.99%	3651.4	7.70%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.187e-01	0.6387	8.0	1.03%	427.4	0.90%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.126e-01	0.6387	5.0	0.64%	254.8	0.54%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.016e-01	0.6396	75.0	9.66%	4444.2	9.37%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.919e-01	0.6431	4.0	0.52%	199.0	0.42%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.885e-01	0.6431	8.0	1.03%	432.4	0.91%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-8.757e-01	0.6480	62.0	7.99%	3672.8	7.74%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.657e-01	0.6517	4.0	0.52%	202.6	0.43%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.656e-01	0.6517	36.0	4.64%	2109.8	4.45%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.550e-01	0.6532	6.0	0.77%	320.2	0.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.320e-01	0.6656	61.0	7.86%	3633.6	7.66%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.205e-01	0.6704	3.0	0.39%	149.3	0.31%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.114e-01	0.6738	7.0	0.90%	386.1	0.81%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-8.008e-01	0.6781	52.0	6.70%	3103.7	6.54%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.863e-01	0.6852	62.0	7.99%	3717.4	7.84%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.817e-01	0.6855	10.0	1.29%	571.4	1.20%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.664e-01	0.6932	76.0	9.79%	4579.2	9.65%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.570e-01	0.6969	9.0	1.16%	517.0	1.09%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.533e-01	0.6969	4.0	0.52%	216.8	0.46%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.321e-01	0.7087	16.0	2.06%	946.2	1.99%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.220e-01	0.7130	7.0	0.90%	402.5	0.85%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.080e-01	0.7201	70.0	9.02%	4248.4	8.96%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.045e-01	0.7201	16.0	2.06%	954.9	2.01%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.966e-01	0.7226	10.0	1.29%	590.6	1.24%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.873e-01	0.7265	15.0	1.93%	898.9	1.89%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.724e-01	0.7344	3.0	0.39%	166.9	0.35%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.494e-01	0.7486	3.0	0.39%	169.8	0.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.311e-01	0.7594	21.0	2.71%	1285.7	2.71%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.159e-01	0.7681	10.0	1.29%	610.0	1.29%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.863e-01	0.7880	25.0	3.22%	1550.4	3.27%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.840e-01	0.7880	49.0	6.31%	3034.5	6.40%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.818e-01	0.7880	4.0	0.52%	242.3	0.51%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.810e-01	0.7880	14.0	1.80%	869.9	1.83%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.782e-01	0.7880	3.0	0.39%	179.8	0.38%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.694e-01	0.7880	2.0	0.26%	116.5	0.25%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.611e-01	0.7897	13.0	1.68%	813.1	1.71%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.396e-01	0.8038	64.0	8.25%	3989.4	8.41%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.372e-01	0.8038	4.0	0.52%	250.9	0.53%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.339e-01	0.8038	12.0	1.55%	759.2	1.60%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.330e-01	0.8038	33.0	4.25%	2072.5	4.37%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-5.323e-01	0.8038	86.0	11.08%	5353.0	11.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.266e-01	0.8038	4.0	0.52%	252.4	0.53%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.997e-01	0.8179	6.0	0.77%	387.4	0.82%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.817e-01	0.8297	10.0	1.29%	649.8	1.37%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.813e-01	0.8297	4.0	0.52%	261.8	0.55%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.750e-01	0.8297	3.0	0.39%	196.2	0.41%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.680e-01	0.8319	6.0	0.77%	395.6	0.83%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.500e-01	0.8440	22.0	2.84%	1425.4	3.00%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.442e-01	0.8458	4.0	0.52%	269.7	0.57%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.433e-01	0.8458	38.0	4.90%	2437.6	5.14%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.402e-01	0.8458	2.0	0.26%	134.7	0.28%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.282e-01	0.8503	38.0	4.90%	2447.6	5.16%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.261e-01	0.8503	10.0	1.29%	668.9	1.41%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.170e-01	0.8537	22.0	2.84%	1442.8	3.04%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.164e-01	0.8537	23.0	2.96%	1506.6	3.18%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.101e-01	0.8537	17.0	2.19%	1126.5	2.37%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.933e-01	0.8649	2.0	0.26%	142.3	0.30%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.869e-01	0.8674	54.0	6.96%	3484.5	7.35%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-3.824e-01	0.8683	5.0	0.64%	352.5	0.74%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.789e-01	0.8683	53.0	6.83%	3428.8	7.23%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.582e-01	0.8833	25.0	3.22%	1669.0	3.52%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.470e-01	0.8902	38.0	4.90%	2506.1	5.28%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.467e-01	0.8902	2.0	0.26%	152.0	0.32%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.361e-01	0.8938	70.0	9.02%	4538.3	9.57%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.354e-01	0.8938	6.0	0.77%	435.9	0.92%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.315e-01	0.8938	4.0	0.52%	298.4	0.63%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-3.292e-01	0.8938	32.0	4.12%	2137.8	4.51%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.275e-01	0.8938	7.0	0.90%	506.8	1.07%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.127e-01	0.8995	5.0	0.64%	374.9	0.79%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.996e-01	0.9083	10.0	1.29%	721.3	1.52%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.931e-01	0.9112	7.0	0.90%	520.1	1.10%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.922e-01	0.9112	9.0	1.16%	657.4	1.39%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.859e-01	0.9116	14.0	1.80%	996.2	2.10%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.823e-01	0.9119	3.0	0.39%	241.7	0.51%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.604e-01	0.9290	9.0	1.16%	673.4	1.42%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.411e-01	0.9439	16.0	2.06%	1159.9	2.45%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.359e-01	0.9458	63.0	8.12%	4214.3	8.88%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.285e-01	0.9497	1.0	0.13%	97.2	0.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.273e-01	0.9497	73.0	9.41%	4863.9	10.25%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.265e-01	0.9497	13.0	1.68%	967.5	2.04%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.256e-01	0.9497	5.0	0.64%	409.5	0.86%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.202e-01	0.9497	43.0	5.54%	2950.4	6.22%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.999e-01	0.9614	7.0	0.90%	567.0	1.20%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.945e-01	0.9635	12.0	1.55%	922.1	1.94%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.894e-01	0.9654	141.0	18.17%	9226.2	19.45%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.882e-01	0.9654	22.0	2.84%	1607.2	3.39%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.846e-01	0.9654	16.0	2.06%	1205.8	2.54%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.832e-01	0.9654	12.0	1.55%	931.2	1.96%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.775e-01	0.9654	73.0	9.41%	4944.5	10.42%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.761e-01	0.9654	2.0	0.26%	200.4	0.42%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.692e-01	0.9665	29.0	3.74%	2096.5	4.42%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.612e-01	0.9712	12.0	1.55%	950.3	2.00%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.524e-01	0.9767	4.0	0.52%	373.9	0.79%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.413e-01	0.9845	2.0	0.26%	216.1	0.46%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.402e-01	0.9845	26.0	3.35%	1934.3	4.08%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.394e-01	0.9845	2.0	0.26%	217.2	0.46%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.374e-01	0.9845	93.0	11.98%	6308.1	13.30%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.354e-01	0.9845	8.0	1.03%	687.4	1.45%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.244e-01	0.9859	4.0	0.52%	392.9	0.83%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.192e-01	0.9880	37.0	4.77%	2706.0	5.70%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.168e-01	0.9880	5.0	0.64%	477.8	1.01%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.101e-01	0.9910	1.0	0.13%	138.1	0.29%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.101e-01	0.9910	7.0	0.90%	637.7	1.34%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.101e-01	0.9910	7.0	0.90%	637.1	1.34%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.076e-01	0.9910	12.0	1.55%	1008.2	2.13%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.038e-01	0.9910	6.0	0.77%	567.2	1.20%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.631e-02	0.9910	6.0	0.77%	575.2	1.21%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.940e-02	0.9936	32.0	4.12%	2431.2	5.12%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-8.656e-02	0.9936	17.0	2.19%	1398.3	2.95%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.944e-02	0.9976	20.0	2.58%	1624.5	3.42%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-7.807e-02	0.9976	1.0	0.13%	158.3	0.33%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.536e-02	0.9976	45.0	5.80%	3345.4	7.05%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.355e-02	0.9976	165.0	21.26%	11109.4	23.42%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-6.422e-02	1.0000	17.0	2.19%	1444.9	3.05%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.655e-02	1.0000	1.0	0.13%	177.5	0.37%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.534e-02	1.0000	12.0	1.55%	1098.2	2.31%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.123e-02	1.0000	66.0	8.51%	4891.4	10.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.119e-02	1.0000	2.0	0.26%	305.3	0.64%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.841e-02	1.0000	1.0	0.13%	200.8	0.42%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.841e-02	1.0000	2.0	0.26%	310.3	0.65%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.616e-02	1.0000	31.0	3.99%	2534.8	5.34%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.609e-02	1.0000	13.0	1.68%	1229.1	2.59%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.346e-02	1.0000	2.0	0.26%	345.9	0.73%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.658e-02	1.0000	13.0	1.68%	1326.6	2.80%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.507e-03	1.0000	15.0	1.93%	1706.6	3.60%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.431e-03	1.0000	17.0	2.19%	1933.4	4.08%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.100e-05	1.0000	30.0	3.87%	3396.5	7.16%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	43.3	0.09%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	85.0	0.18%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	31.4	0.07%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	28.9	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	11.8	0.02%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	26.0	0.05%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	50.9	0.11%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	37.8	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	18.6	0.04%