Information for 4-AATRYAAACAARA (Motif 4)

C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
Reverse Opposite:
A G C T G A T C G A C T C G A T C T A G A C G T A G C T C G A T C T A G G A T C G C T A A G C T C G A T
p-value:1e-28
log p-value:-6.633e+01
Information Content per bp:1.643
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif8.51%
Number of Background Sequences with motif694.2
Percentage of Background Sequences with motif1.46%
Average Position of motif in Targets55.7 +/- 24.8bp
Average Position of motif in Background50.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1/MA0148.3/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AATRYAAACAARA-
CAAAGTAAACANNNN
 A C G T C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXC2/MA0846.1/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:AATRYAAACAARA
TAAGTAAACAAA-
 C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.90
Offset:0
Orientation:forward strand
Alignment:AATRYAAACAARA
AAAGTAAACA---
 C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:AATRYAAACAARA
AAAGTAAACA---
 C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:AATRYAAACAARA
WAAGTAAAYA---
 C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--AATRYAAACAARA
NCWRWGTAAACANSV
 A C G T A C G T C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:AATRYAAACAARA
WWTRTAAACAVG-
 C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:AATRYAAACAARA
-AAATAAACA---
 C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:9
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--AATRYAAACAARA
NCTAAGTAAACA---
 A C G T A C G T C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----AATRYAAACAARA
NNNVCTGWGYAAACASN-
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G A T C T A G A G T C G C T A C T G A C G T A A G T C C G T A C T G A C T A G T C G A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T