Information for 14-TGCCAGGCAGGTT (Motif 15)

A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
Reverse Opposite:
C G T A C G T A G T A C A G T C A C G T A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A
p-value:1e-11
log p-value:-2.538e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 13.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGCCAGGCAGGTT-
---AAGGCAAGTGT
 A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAGGCAGGTT
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGCAGGTT
TTGCCAAG------
 A C G T A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGCCAGGCAGGTT-
----TGGCAGTTGN
 A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGGCAGGTT
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGCCAGGCAGGTT-
-----AACAGGTGT
 A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCAGGCAGGTT
TTCCNGGAAG---
 A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGGCAGGTT
NNCTTCCNGGAAGN--
 A C G T A C G T A C G T A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGCCAGGCAGGTT----
-NNNTGGCAGTTGGTNN
 A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGCAGGTT
BTGABTGACAGS--
 A C G T A C G T A C T G G T A C A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C T G A C G T C G A T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T