Information for 17-CTGCCTGCAGRCA (Motif 24)

G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
Reverse Opposite:
C G A T T A C G G A T C A G T C A C G T A T C G A T G C C G T A A C T G T C A G A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.788
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 26.5bp
Average Position of motif in Background30.8 +/- 17.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C/MA0524.2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGCAGRCA
-TGCCCTNGGGCA
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
A C G T G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2B/MA0811.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGCAGRCA
-TGCCCTNGGGCA
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGCAGRCA
-TGCCCNGGGGCA
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGCCTGCAGRCA
CTGTCTGG-----
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGCCTGCAGRCA
CCCCCTGCTGTG-
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGCCTGCAGRCA
---CCTGCTGAGH
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGCCTGCAGRCA
GGCCYCCTGCTGDGH
 A C G T A C G T G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGCCTGCAGRCA-
NTGCCCTAGGGCAA
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A A C G T
C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGCCTGCAGRCA
VBSYGTCTGG-----
 A C G T A C G T G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGCCTGCAGRCA
CTGCCCGCA----
 G T A C A C G T C T A G A G T C G T A C A C G T A T C G A T G C C G T A A C T G C T A G A G T C C G T A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T