Information for 7-GAGTAMTTKWGWACTT (Motif 16)

C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
Reverse Opposite:
C G T A C G T A A C T G A G C T C G A T A G T C C G A T T G A C C G T A G T C A A C T G A C G T C T G A G T A C A C G T A G T C
p-value:1e-8
log p-value:-1.973e+01
Information Content per bp:1.864
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.5 +/- 13.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGTAMTTKWGWACTT----
---NATTTAAGTACTTANNA
 C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GAGTAMTTKWGWACTT
ACTCCAAGTACTTGGAA----
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGTAMTTKWGWACTT------
--NTAATTDGCYAATTANNWWD
 C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A C T T C G A C G T A C G A T A G C T C T G A A C T G T G A C G A C T T C G A C G T A A C G T A G C T C T G A C T G A G T C A G C T A G C T A C G T A

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAGTAMTTKWGWACTT----
---NATTTAAGTACTTNAAA
 C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGTAMTTKWGWACTT----
----CTTTAAGTACTTAATG
 C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGTAMTTKWGWACTT
-AATAATT--------
 C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGTAMTTKWGWACTT
TTAAGTGCTT--------
 A C G T A C G T C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GAGTAMTTKWGWACTT
GANGTAATTAATTANN-
 A C G T C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T A C G T

PH0071.1_Hoxc6/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GAGTAMTTKWGWACTT
CAAATTAATTAATAAAA-
 A C G T A C G T C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A A C G T

DLX6/MA0882.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GAGTAMTTKWGWACTT
--NTAATTGN------
 C T A G C G T A A C T G A G C T G T C A T G A C C A G T C G A T A C T G C G T A A C T G C G T A C T G A G T A C A C G T C G A T
A C G T A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T