Information for 9-GGCATTGGCC (Motif 12)

A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C
Reverse Opposite:
A C T G A T C G T G A C A T G C C T G A C G T A A G C T A C T G A G T C G T A C
p-value:1e-9
log p-value:-2.296e+01
Information Content per bp:1.843
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif101.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets50.1 +/- 25.6bp
Average Position of motif in Background54.4 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGCATTGGCC--
AGGTCANTGACCTN
 A C G T A C G T A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGCATTGGCC
CCGATTGGCT
 A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCATTGGCC---
-TGATTGGCTANN
 A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGCATTGGCC
----TTGGCA
 A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGCATTGGCC-
TGACCTTGACCT
 A C G T A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCATTGGCC-
TGACCTTGACCT
 A C G T A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGCATTGGCC--
---NTTGGCANN
 A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCATTGGCC
TGACCTTGAN-
 A C G T A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCATTGGCC
CTCATTGTC-
 A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGCATTGGCC-
-CCATTGTTTT
 A C T G T C A G A G T C T C G A G C A T A G C T A T C G A C T G A T G C A G T C A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T