Information for 11-CCTTGGCCASTGC (Motif 13)

A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
Reverse Opposite:
A T C G A G T C C G T A A T C G C A G T A T C G A C T G A G T C A G T C T C G A T G C A A C T G C T A G
p-value:1e-10
log p-value:-2.310e+01
Information Content per bp:1.759
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif59.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets46.9 +/- 31.3bp
Average Position of motif in Background45.5 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTTGGCCASTGC
--TTGGCA-----
 A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGCCASTGC
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCCASTGC
-NTTGGCANN---
 A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTTGGCCASTGC
SCCTAGCAACAG-
 A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCCASTGC
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTTGGCCASTGC
-CTAGGCCT----
 A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGCCASTGC
GAGCCCTTGTCCCTAA-
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCCASTGC
TGACCTTGAN------
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGCCASTGC
GGGGCCGAGGCCTG---
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGCCASTGC
TGACCTTGAV------
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C T A G A C T G G T A C A T G C G T C A T A G C C G A T C T A G A T G C
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T