Information for 5-GAGGGCGCTGTCB (Motif 6)

A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
Reverse Opposite:
T G A C T A C G C T G A A T G C T C G A A C T G G T A C A T C G A T G C G T A C G T A C G A C T A T G C
p-value:1e-14
log p-value:-3.278e+01
Information Content per bp:1.701
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif142.4
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets42.3 +/- 22.8bp
Average Position of motif in Background45.2 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GAGGGCGCTGTCB
---GGCGCGCT--
 A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCGCTGTCB-
TTGGGGGCGCCCCTAG
 A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------GAGGGCGCTGTCB
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTGTCB-
NNAGGGGCGGGGTNNA
 A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G A C G T
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGCGCTGTCB
NNNAAGGGGGCGGGNNN-
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T

Klf12/MA0742.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGCGCTGTCB
NANAAGGGCGTGGTC-
 A C G T A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:-9
Orientation:reverse strand
Alignment:---------GAGGGCGCTGTCB
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTGTCB
NNVDGGGYGGGGCYN
 A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

PB0010.1_Egr1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGCGCTGTCB
ANTGCGGGGGCGGN--
 A C G T A C G T A C G T A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GAGGGCGCTGTCB
------GCTGTG-
 A T C G C T G A A C T G A C T G A T C G A T G C C A T G A G T C A G C T A T C G G A C T A T G C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T