Information for 5-GAATGTCAAC (Motif 6)

A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C
Reverse Opposite:
A T C G A C G T C G A T A T C G G T C A A G T C G C T A A C G T A C G T A G T C
p-value:1e-12
log p-value:-2.844e+01
Information Content per bp:1.828
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif81.4
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets45.8 +/- 24.5bp
Average Position of motif in Background50.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAATGTCAAC
AAAAGTCAA-
 A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAATGTCAAC---
-TATGTAAACANG
 A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C A C G T A C G T A C G T
A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAATGTCAAC
--NTGTCAN-
 A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAATGTCAAC------
AAAATGTAAACAAACAG
 A C G T A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAATGTCAAC------
AAAATGTAAACAAACAG
 A C G T A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAATGTCAAC
TCAAGGTCAT-
 A C G T A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAATGTCAAC
-CCTGTCAA-
 A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GAATGTCAAC-
---TGTCANYT
 A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C A C G T
A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAATGTCAAC-
-AAAGTAAACA
 A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAATGTCAAC----
NCWRWGTAAACANSV
 A C G T A C T G C G T A G T C A C A G T A C T G A C G T T A G C G C T A C G T A A T G C A C G T A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G