Information for 4-CCAAGCGTTA (Motif 4)

A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A
Reverse Opposite:
A C G T G C T A C T G A A G T C A C T G A G T C A C G T A G C T A C T G A T C G
p-value:1e-13
log p-value:-3.032e+01
Information Content per bp:1.861
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.8 +/- 16.0bp
Average Position of motif in Background57.1 +/- 41.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCAAGCGTTA-
AANTCATGCGTGAA
 A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PB0046.1_Mybl1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCGTTA----
TTGAAAACCGTTAATTT
 A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T A C G T A C G T A C G T
G A C T C G A T C A T G C G T A G C T A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C T A G C A T G A C T C G A T

PB0045.1_Myb_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCGTTA----
ATGGAAACCGTTATTTT
 A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T A C G T A C G T A C G T
G C T A C G A T C A T G C A T G G T C A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C A T G C A T G A C T C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAAGCGTTA
-CAAGCTT--
 A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCAAGCGTTA--
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCAAGCGTTA
--AACCGANA
 A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A
A C G T A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CCAAGCGTTA--
NGCANTCATGCGTGACG
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CCAAGCGTTA--
TGCAGTCATGCGTGACG
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGCGTTA
TGCCAA------
 A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:10
Score:0.57
Offset:-8
Orientation:forward strand
Alignment:--------CCAAGCGTTA-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C T G A C G T A A C T G T A G C A C T G A G C T C A G T C G T A A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C