Information for 15-TTTTATGTCA (Motif 26)

A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A C G T A
p-value:1e-6
log p-value:-1.486e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.5 +/- 29.2bp
Average Position of motif in Background39.0 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGTCA
NTTTTATGAC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTTATGTCA-
TTTTATGGCTN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTTTATGTCA
TTTTATTGC-
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATGTCA--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGTCA
NTTTTATTACN
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATGTCA--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

NFIL3/MA0025.1/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTTTATGTCA---
--TTATGTAACAT
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTTATGTCA
TTTTATTRGN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGTCA
DGWTTTATGRCN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGTCA
NTTTTACGAC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T