Information for 11-CTCTTGGCTTTGG (Motif 20)

A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C G T A C G T A A C T G A T G C A G T C C T G A C G T A A C T G C G T A C T A G
p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.5 +/- 19.2bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCTTGGCTTTGG--
NNTGTTTATTTTGGCA
 A C G T A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G A C G T A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGGCTTTGG
NNACTTGCCTT---
 A C G T A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG
---TTGACTTTT-
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG
--BNTGDCCTTG-
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG-
----TGACCTTGAN
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG-----
---TGGACTTTGNNCTCN
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG-
----TGACCTTGAV
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG------
---TGGACTTTGNNCTNTG
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG
--NTTGGCANN--
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTCTTGGCTTTGG
--CTGACCTTTG-
 A G T C A C G T A G T C A C G T A G C T A C T G A T C G A G T C A C G T A C G T A C G T A C T G A C T G
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T