Information for 10-GGCCCTCTAGAAG (Motif 19)

A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G
Reverse Opposite:
A G T C A G C T A G C T A G T C A C G T C G T A A C T G C G T A A C T G C T A G A C T G A T G C G T A C
p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.865
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.0 +/- 25.7bp
Average Position of motif in Background60.5 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCCCTCTAGAAG
NSCACTYVAV---
 A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCCCTCTAGAAG-
NGCTTTCTAGGAAN
 A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G A C G T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCCCTCTAGAAG
AGCCACTCAAG---
 A C G T A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GGCCCTCTAGAAG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGCCCTCTAGAAG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCCCTCTAGAAG
RSCACTYRAG---
 A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGCCCTCTAGAAG-
--GNCTATAAAAGG
 A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G A C G T
A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCCCTCTAGAAG
AASCACTCAA----
 A C G T A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGCCCTCTAGAAG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCCCTCTAGAAG
---TGTCTAGACG
 A C T G A T C G A G T C A G T C A G T C A C G T G T A C A C G T C G T A A C T G C T G A C T G A A C T G
A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G