Information for 6-CTGCAATCAA (Motif 6)

A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A
Reverse Opposite:
G C A T A C G T A C T G C T G A A C G T A C G T C T A G A G T C G T C A A C T G
p-value:1e-9
log p-value:-2.073e+01
Information Content per bp:1.835
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif105.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets45.6 +/- 23.1bp
Average Position of motif in Background52.1 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CTGCAATCAA
--CCAATCAA
 A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0063.1_Hoxb8/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGCAATCAA----
ACCGGCAATTAATAAA
 A C G T A C G T A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTGCAATCAA----
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGCAATCAA-
CCATCAATCAAA
 A C G T A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTGCAATCAA--
--GCAATAAAAA
 A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T A C G T
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGCAATCAA-
-HNRAATCAAT
 A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T
A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGCAATCAA-----
ACAAGCAATTAATGAAT
 A C G T A C G T A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGCAATCAA-----
ACAAGCAATTAATGAAT
 A C G T A C G T A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTGCAATCAA-
--GCAATAAAA
 A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGCAATCAA--
-GGTAATAAAAA
 A G T C A C G T C T A G G A T C C G T A T G C A G A C T G T A C C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A