Information for 4-GAGGGCGCTSTCTSCC (Motif 3)

A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
Reverse Opposite:
A C T G C T A G A T C G C G T A C T A G C G T A A T G C T C G A A C T G G T A C C A T G A G T C G T A C A G T C A G C T G T A C
p-value:1e-12
log p-value:-2.853e+01
Information Content per bp:1.773
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif22.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.9 +/- 21.4bp
Average Position of motif in Background42.7 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGGGCGCTSTCTSCC
---GGCGCGCT-----
 A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCGCTSTCTSCC
ATAAGGGCGCGCGAT---
 A C G T A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTSTCTSCC
NNNGGGGCGCCCCCNN--
 A C G T A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCGCTSTCTSCC
NTCGCGCGCCTTNNN--
 A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGCGCTSTCTSCC
NANAAGGGCGTGGTC----
 A C G T A C G T A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T A C G T A C G T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGCGCTSTCTSCC
AAAAATGGCGCCATTTTT-
 A C G T A C G T A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAGGGCGCTSTCTSCC
-RGGGCACTAACY---
 A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGCGCTSTCTSCC
NNNAAGGGGGCGGGNNN----
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GAGGGCGCTSTCTSCC
----GCTCGGSCTC--
 A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
A C G T A C G T A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTSTCTSCC
NNAGGGGCGGGGTNNA--
 A C G T A C G T A C T G C T G A A C T G A C T G A C T G G A T C A C T G A G T C A C G T A T C G A C G T A G T C A C G T A T G C A G T C T A G C
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A A C G T A C G T