Information for 4-CAGAGGGAGCAAG (Motif 4)

A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
Reverse Opposite:
T A G C A C G T A C G T A T C G A G T C C G A T T A G C A G T C A G T C A G C T A G T C A C G T A C T G
p-value:1e-13
log p-value:-3.081e+01
Information Content per bp:1.791
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif53.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets54.5 +/- 17.5bp
Average Position of motif in Background58.3 +/- 35.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CAGAGGGAGCAAG-
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CAGAGGGAGCAAG
----CGGAGC---
 A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGAGGGAGCAAG-
----GGGAGGACNG
 A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G A C G T
A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGAGCAAG
AACAGATGGT-----
 A C G T A C G T A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGAGCAAG--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGAGCAAG
AACAGATGGC-----
 A C G T A C G T A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGAGCAAG
AACAKATGGY-----
 A C G T A C G T A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGAGGGAGCAAG
-AGAGGAAGTG--
 A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAGGGAGCAAG
AACAGGAAGT---
 A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAGGGAGCAAG--
AAGGKGRCGCAGGCA
 A G T C C G T A C T A G C T G A C T A G A C T G A T C G C G T A A C T G A T G C T G C A T G C A A C T G A C G T A C G T
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A